Browse Element(s) Details


OsAffx.27764.1.S1_at

Description tigr:9634.m02168
TID=OsAffx.27764.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2212011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22090Os.31911.1.S1_at1/116+12813795..12819941retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g22090Os.41248.4.S1_x_at1/116+12813795..12819941retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g22100OsAffx.15547.1.S1_at11/116+12824827..12826244expressed protein
LOC_Os06g22110NANA6+12835897..12836437retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g22120OsAffx.27764.1.S1_at11/116+12838382..12840368hypothetical protein
LOC_Os06g22120OsAffx.14951.1.S1_at1/116+12838382..12840368hypothetical protein
LOC_Os06g22130NANA6+12840886..12841606retrotransposon protein, putative, unclassified
LOC_Os06g22140Os.9453.1.S1_at11/116+12847659..12851831Thioredoxin reductase 1, putative, expressed
LOC_Os06g22150OsAffx.15548.1.S1_x_at11/116+12859094..12859591hypothetical protein
LOC_Os06g22160OsAffx.14865.1.S1_at1/116+12861431..12863379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22170OsAffx.828.1.S1_x_at1/116+12864625..12865886hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27764.1.S1_at--149--10031Chr06:12838852..12838871 (20 bp)
TAGCAATACATTTCCCTTTTCATAG
LOC_Os06g22120
OsAffx.27764.1.S1_at--113--10391Chr06:12838863..12838887 (25 bp)
TTTTCATAGTAAACATCGCCACCAC
LOC_Os06g22120
OsAffx.27764.1.S1_at--1146--10131Chr06:12840098..12840122 (25 bp)
TATCCCCAACCTTGCCAGAGGTGGA
LOC_Os06g22120
OsAffx.27764.1.S1_at--840--9311Chr06:12840131..12840155 (25 bp)
TCCCAAGGCCATTGCGCCGGATCAA
LOC_Os06g22120
OsAffx.27764.1.S1_at--106--1491Chr06:12840182..12840206 (25 bp)
AGAATTGCACTACCGGATCTGCGAG
LOC_Os06g22120
OsAffx.27764.1.S1_at--554--9131Chr06:12840201..12840225 (25 bp)
TGCGAGGCCCTAGTCCGAGGCTATC
LOC_Os06g22120
OsAffx.27764.1.S1_at--130--6211Chr06:12840217..12840241 (25 bp)
GAGGCTATCGCTCGTATCGACAAGG
LOC_Os06g22120
OsAffx.27764.1.S1_at--1086--5591Chr06:12840235..12840259 (25 bp)
GACAAGGTAGATCCATCGCACTCAC
LOC_Os06g22120
OsAffx.27764.1.S1_at--18--8391Chr06:12840278..12840302 (25 bp)
GGCGATGGATCCACTGCTCTCGTGG
LOC_Os06g22120
OsAffx.27764.1.S1_at--376--9511Chr06:12840295..12840319 (25 bp)
TCTCGTGGGTGCAAGTGGCAGATCC
LOC_Os06g22120
OsAffx.27764.1.S1_at--257--8511Chr06:12840310..12840334 (25 bp)
TGGCAGATCCGCCTAGCCTGAGACC
LOC_Os06g22120
Target Sequence 
TAGCAATACATTTCCCTTTTCATAGTAAACATCGCCACCACGCACGCTACACTCCATCGCCACCACGCACGCGACGGTGC
CAGGGGCCCGTCGCCGGAGAAGGGTGGCGCCGCCGACTCGAGCGGGCGACGGGCGACTCACTAAGGGCCGGCGGCGGCAG
CGGCGGCGGTGTCTTGAATCGCAGGAAGCGGAGTCGAAACGAAGCGACGTGGACGTCGCGTCCCAGTGTGCCGGACGGGG
TTGCTGTGGGGGGTGATTTGCAAAAAAAGGAGATTAGCAAGTCTTACAAGAAGAGTAAGTACTTAACAACCGTCAACACT
ATCCCCAACCTTGCCAGAGGTGGATCCGCCCCTCCCAAGGCCATTGCGCCGGATCAACAAGGGAGGGGGAAAGGTGAGAG
AGAAGAATTGCACTACCGGATCTGCGAGGCCCTAGTCCGAGGCTATCGCTCGTATCGACAAGGTAGATCCATCGCACTCA
CGCTTCCACCAACCTCCTCGGCGATGGATCCACTGCTCTCGTGGGTGCAAGTGGCAGATCCGCCTAGCCTGAGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis