Browse Element(s) Details


OsAffx.14865.1.S1_at

Description tigr:9633.m02615
TID=OsAffx.14865.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g285909/11retrotransposon protein, putative, unclassified
LOC_Os06g221601/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28530OsAffx.14862.1.S1_x_at11/115+16636776..16637522Glutaredoxin family protein
LOC_Os05g28540Os.20627.3.S1_x_at1/115+16639174..16643475retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28540OsAffx.1646.1.S1_x_at1/115+16639174..16643475retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28550OsAffx.22722.1.S1_at2/115+16643769..16646105retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28550OsAffx.22722.1.S1_x_at1/115+16643769..16646105retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28560OsAffx.10496.1.S1_at1/115+16646996..16649855retrotransposon protein, putative, unclassified
LOC_Os05g28570OsAffx.14863.1.S1_at11/115+16651440..16652916hypothetical protein
LOC_Os05g28580OsAffx.14864.1.S1_at8/115+16654193..16654894hypothetical protein
LOC_Os05g28590OsAffx.14865.1.S1_at9/115+16658126..16660665retrotransposon protein, putative, unclassified
LOC_Os05g28590OsAffx.22240.1.S1_x_at1/115+16658126..16660665retrotransposon protein, putative, unclassified
LOC_Os05g28590OsAffx.8338.1.S1_x_at1/115+16658126..16660665retrotransposon protein, putative, unclassified
LOC_Os05g28590OsAffx.20733.1.S1_x_at1/115+16658126..16660665retrotransposon protein, putative, unclassified
LOC_Os05g28590OsAffx.9790.1.S1_x_at1/115+16658126..16660665retrotransposon protein, putative, unclassified
LOC_Os05g28600NANA5+16661467..16663891transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28610OsAffx.14866.1.S1_at11/115+16668269..16669243hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14865.1.S1_at--339--2091Chr05:16658220..16658244 (25 bp)
ACATAGAGGGCGTCGTGGCGAACTC
LOC_Os05g28590
OsAffx.14865.1.S1_at--981--2411NONE
AAAACAGCGGCAGACGGGTGTGACA
NONE
OsAffx.14865.1.S1_at--678--8351NONE
GGCGGCGAATGCTATTGGAAGAAAT
NONE
OsAffx.14865.1.S1_at--383--2531Chr05:16660124..16660148 (25 bp)
AACTCAAACAGGACTAGGATGGGAC
LOC_Os05g28590
OsAffx.14865.1.S1_at--463--6251Chr05:16660141..16660165 (25 bp)
GATGGGACAACACAAGGCAAACAGT
LOC_Os05g28590
OsAffx.14865.1.S1_at--622--2131Chr05:16660161..16660185 (25 bp)
ACAGTGATGGCGACTGCAGAACGTT
LOC_Os05g28590
OsAffx.14865.1.S1_at--260--51Chr05:16660193..16660414 (25 bp)
ATTGAAATCGGACAAGGCACCATTC
LOC_Os05g28590
OsAffx.14865.1.S1_at--1144--8131Chr05:16660399..16660423 (25 bp)
GGACAAGGCACCATTCCGACAAACA
LOC_Os05g28590
OsAffx.14865.1.S1_at--74--5631Chr05:16660416..16660440 (25 bp)
GACAAACACCACTCATGCAATTCAT
LOC_Os05g28590
OsAffx.14865.1.S1_at--55--9532Chr05:16660594..16660618 (25 bp)
TCTCAGCACAGACATTATCATCCAT
LOC_Os05g28590
OsAffx.14865.1.S1_at--1068--411Chr05:16660610..16660634 (25 bp)
ATCATCCATTCAATCATTTGCTAGG
LOC_Os05g28590
Target Sequence 
ACATAGAGGGCGTCGTGGCGAACTCACCGGTGACCAAAACAGCGGCAGACGGGTGTGACAGGACGGCGGTGGCGCCTCGG
GGACACGCAGGCGGCGGCGGAACGGCCGACGATGGTAGGGCGGCGGCTCAGGACGCGCGGCGGCGGCGAATGCTATTGGA
AGAAATTGAGAACTCAAACAGGACTAGGATGGGACAACACAAGGCAAACAGTGATGGCGACTGCAGAACGTTGGAGGAAA
TTGAAATCGGACAAGGCACCATTCCGACAAACACCACTCATGCAATTCATATTGCCGATGATAATGAAATTGATGAGGAA
ACTGATGAGGATGAATCAACTGCCAAGATAAAGAGGGATGGTGGTGGATCAAAGATGGATAAGGGGAAAAGAGCAAGAGT
GGATCCCAAAAGATGGTACAGGAGATGTCCAAGAGTAATGAACTCTCAGCACAGACATTATCATCCATTCAATCATTTGC
TAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis