Browse Element(s) Details


OsAffx.17817.1.S1_x_at

Description tigr:9637.m01811
TID=OsAffx.17817.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2109011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21050OsAffx.17814.1.S1_at11/119+12692578..12693000hypothetical protein
LOC_Os09g21060OsAffx.29954.1.S1_at11/119+12695927..12696302expressed protein
LOC_Os09g21060OsAffx.29954.1.S1_s_at11/119+12695927..12696302expressed protein
LOC_Os09g21070OsAffx.17815.1.S1_at11/119+12701497..12701886hypothetical protein
LOC_Os09g21080OsAffx.17816.1.S1_x_at11/119+12706784..12707074hypothetical protein
LOC_Os09g21090OsAffx.17817.1.S1_x_at11/119+12712093..12712344hypothetical protein
LOC_Os09g21090OsAffx.17817.1.S1_at11/119+12712093..12712344hypothetical protein
LOC_Os09g21100OsAffx.17818.1.S1_at11/119+12720513..12725246Mov34/MPN/PAD-1 family protein
LOC_Os09g21100Os.15690.1.S1_at1/119+12720513..12725246Mov34/MPN/PAD-1 family protein
LOC_Os09g21110Os.24539.1.S1_at10/119+12729778..12734641leucyl-tRNA synthetase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17817.1.S1_x_at--713--6411Chr09:12712276..12712300 (25 bp)
GATCTGCATGCTGGCCCTGATCATG
LOC_Os09g21090
OsAffx.17817.1.S1_x_at--1021--611Chr09:12712269..12712293 (25 bp)
ATGCTGGCCCTGATCATGGGGCAGC
LOC_Os09g21090
OsAffx.17817.1.S1_x_at--218--8471Chr09:12712196..12712220 (25 bp)
TGGCCGAGGCCAACAATGAGAAGCT
LOC_Os09g21090
OsAffx.17817.1.S1_x_at--264--8431Chr09:12712189..12712213 (25 bp)
GGCCAACAATGAGAAGCTGCCGGTG
LOC_Os09g21090
OsAffx.17817.1.S1_x_at--698--4691Chr09:12712133..12712157 (25 bp)
GCGGCAACCACTATCACGTGCAGTG
LOC_Os09g21090
OsAffx.17817.1.S1_x_at--507--3951Chr09:12712132..12712156 (25 bp)
CGGCAACCACTATCACGTGCAGTGC
LOC_Os09g21090
OsAffx.17817.1.S1_x_at--1--5171Chr09:12712130..12712154 (25 bp)
GCAACCACTATCACGTGCAGTGCCA
LOC_Os09g21090
OsAffx.17817.1.S1_x_at--248--3251Chr09:12712129..12712153 (25 bp)
CAACCACTATCACGTGCAGTGCCAG
LOC_Os09g21090
OsAffx.17817.1.S1_x_at--386--2651Chr09:12712128..12712152 (25 bp)
AACCACTATCACGTGCAGTGCCAGG
LOC_Os09g21090
OsAffx.17817.1.S1_x_at--294--1711Chr09:12712127..12712151 (25 bp)
ACCACTATCACGTGCAGTGCCAGGT
LOC_Os09g21090
OsAffx.17817.1.S1_x_at--122--3331Chr09:12712125..12712149 (25 bp)
CACTATCACGTGCAGTGCCAGGTCG
LOC_Os09g21090
Target Sequence 
GATCTGCATGCTGGCCCTGATCATGGGGCAGCAGCTGACGACGACGGCGGCGGCGGGGCAGCGCGGGCGGCAGCTGCTGG
TGGCCGAGGCCAACAATGAGAAGCTGCCGGTGGGCACGACGGCCGCCGGAGCCGGCGGCGGCCGCGGCAACCACTATCAC
GTGCAGTGCCAGGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17817.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis