Browse Element(s) Details


OsAffx.17818.1.S1_at

Description tigr:9637.m01812
TID=OsAffx.17818.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2110011/11Mov34/MPN/PAD-1 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21060OsAffx.29954.1.S1_at11/119+12695927..12696302expressed protein
LOC_Os09g21060OsAffx.29954.1.S1_s_at11/119+12695927..12696302expressed protein
LOC_Os09g21070OsAffx.17815.1.S1_at11/119+12701497..12701886hypothetical protein
LOC_Os09g21080OsAffx.17816.1.S1_x_at11/119+12706784..12707074hypothetical protein
LOC_Os09g21090OsAffx.17817.1.S1_x_at11/119+12712093..12712344hypothetical protein
LOC_Os09g21090OsAffx.17817.1.S1_at11/119+12712093..12712344hypothetical protein
LOC_Os09g21100OsAffx.17818.1.S1_at11/119+12720513..12725246Mov34/MPN/PAD-1 family protein
LOC_Os09g21100Os.15690.1.S1_at1/119+12720513..12725246Mov34/MPN/PAD-1 family protein
LOC_Os09g21110Os.24539.1.S1_at10/119+12729778..12734641leucyl-tRNA synthetase family protein, expressed
LOC_Os09g21120OsAffx.29955.1.S1_at11/119+12745594..12747732U-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17818.1.S1_at--55--831Chr09:12723623..12723647 (25 bp)
ATGGTATCTCTGATTGCAGCCCTTA
LOC_Os09g21100
OsAffx.17818.1.S1_at--638--5071Chr09:12723638..12723662 (25 bp)
GCAGCCCTTATCGAATGGTGTATGT
LOC_Os09g21100
OsAffx.17818.1.S1_at--929--71Chr09:12723886..12723910 (25 bp)
ATTGCTGGCACCTTGCGAGTGGACA
LOC_Os09g21100
OsAffx.17818.1.S1_at--697--291Chr09:12724001..12724025 (25 bp)
ATACTTTATTGCCACGGACTTGATA
LOC_Os09g21100
OsAffx.17818.1.S1_at--588--2832Chr09:12724046..12724314 (25 bp)
AAGTTATTCGCGTGAGGCTACAAAT
LOC_Os09g21100
OsAffx.17818.1.S1_at--200--2571Chr09:12724343..12724367 (25 bp)
AACTGGGTTCACCATCTCATCTGGG
LOC_Os09g21100
OsAffx.17818.1.S1_at--450--2471Chr09:12724663..12724687 (25 bp)
AACACAGGAGTGCTTCATGTCTTCT
LOC_Os09g21100
OsAffx.17818.1.S1_at--469--9631Chr09:12724677..12724701 (25 bp)
TCATGTCTTCTGTTGATCTCCATAA
LOC_Os09g21100
OsAffx.17818.1.S1_at--711--191Chr09:12724930..12724954 (25 bp)
ATTTGCGATAGTTGTGGCACCTTCA
LOC_Os09g21100
OsAffx.17818.1.S1_at--110--51Chr09:12725131..12725155 (25 bp)
ATTGCGACGACAGAGGATTCCATCC
LOC_Os09g21100
OsAffx.17818.1.S1_at--40--3231Chr09:12725192..12725216 (25 bp)
CAAGTGGGACTCTACCATATCGCTT
LOC_Os09g21100
Target Sequence 
ATGGTATCTCTGATTGCAGCCCTTATCGAATGGTGTATGTTCCTGAAGAATTGATAAGTCGTTTTCTAAACGAAGCTGTG
GAAAATACTACAAAAAGTTTAGAAACATGTGGGATCATTGCTGGCACCTTGCGAGTGGACATGGATGTTAAATACTTTAT
TGCCACGGACTTGATAATTCCAAAGCAGGAATCAACAAGTTATTCGCGTGAGGCTACAAATGAAGAAGAAATACTTGACA
TTTTCGAACAACTGGGTTCACCATCTCATCTGGGTTGGATTCATACACATCCAACACAGGAGTGCTTCATGTCTTCTGTT
GATCTCCATAATCATTACTCCAATCAGAAGGATCTCAGAGAAGCATTTGCGATAGTTGTGGCACCTTCAAAACGAGAACA
AAATATATTTCATCTAACTGTCCCAGATGGTATGGATGAAATTGGCGATTGCGACGACAGAGGATTCCATCCACATGACA
GGACAACTTATGAAGAGTGCTCCCATGTCAAGTGGGACTCTACCATATCGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17818.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis