Browse Element(s) Details


OsAffx.29955.1.S1_at

Description tigr:9637.m01814
TID=OsAffx.29955.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=T10O24.19, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2112011/11U-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21100OsAffx.17818.1.S1_at11/119+12720513..12725246Mov34/MPN/PAD-1 family protein
LOC_Os09g21100Os.15690.1.S1_at1/119+12720513..12725246Mov34/MPN/PAD-1 family protein
LOC_Os09g21110Os.24539.1.S1_at10/119+12729778..12734641leucyl-tRNA synthetase family protein, expressed
LOC_Os09g21120OsAffx.29955.1.S1_at11/119+12745594..12747732U-box domain containing protein
LOC_Os09g21130NANA9+12753490..12754265hypothetical protein
LOC_Os09g21140OsAffx.17819.1.S1_at11/119+12757361..12757741hypothetical protein
LOC_Os09g21150OsAffx.17820.1.S1_at11/119+12760129..12762148hypothetical protein
LOC_Os09g21160OsAffx.29957.2.S1_s_at11/119+12771638..12773119UDP-glucoronosyl/UDP-glucosyl transferase family protein, putative
LOC_Os09g21160OsAffx.29957.1.S1_x_at11/119+12771638..12773119UDP-glucoronosyl/UDP-glucosyl transferase family protein, putative
LOC_Os09g21160OsAffx.29957.1.S1_at11/119+12771638..12773119UDP-glucoronosyl/UDP-glucosyl transferase family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29955.1.S1_at--1017--1571Chr09:12747185..12747209 (25 bp)
AGCTCATCCGGGACGGCGCGTACCG
LOC_Os09g21120
OsAffx.29955.1.S1_at--267--4031Chr09:12747203..12747227 (25 bp)
CGTACCGCGGGCGGAAGAACGCCAT
LOC_Os09g21120
OsAffx.29955.1.S1_at--141--1451Chr09:12747218..12747242 (25 bp)
AGAACGCCATGGTCAGCCTGTACGG
LOC_Os09g21120
OsAffx.29955.1.S1_at--7--1831Chr09:12747221..12747245 (25 bp)
ACGCCATGGTCAGCCTGTACGGGCT
LOC_Os09g21120
OsAffx.29955.1.S1_at--699--8751Chr09:12747236..12747260 (25 bp)
TGTACGGGCTGCTCCAGAGCGCCGC
LOC_Os09g21120
OsAffx.29955.1.S1_at--66--4071Chr09:12747365..12747389 (25 bp)
CGAGGATCGCCGAGCAGCCGTCTGG
LOC_Os09g21120
OsAffx.29955.1.S1_at--711--9311Chr09:12747466..12747490 (25 bp)
TCCCGGTCGGCGAGAGACCACAGCG
LOC_Os09g21120
OsAffx.29955.1.S1_at--188--7191Chr09:12747471..12747495 (25 bp)
GTCGGCGAGAGACCACAGCGTGTCG
LOC_Os09g21120
OsAffx.29955.1.S1_at--1065--7571Chr09:12747559..12747583 (25 bp)
GGGCTGATGGCGTCGCTCTACTCGC
LOC_Os09g21120
OsAffx.29955.1.S1_at--842--4691Chr09:12747596..12747620 (25 bp)
GCGGCAGCCCGCAGACGAGCAAGAA
LOC_Os09g21120
OsAffx.29955.1.S1_at--549--9092Chr09:12747632..12747656 (25 bp)
TGCTCAACGAGATCCACCGGCATTA
LOC_Os09g21120
Target Sequence 
AGCTCATCCGGGACGGCGCGTACCGCGGGCGGAAGAACGCCATGGTCAGCCTGTACGGGCTGCTCCAGAGCGCCGCCAAC
CACGGCAGGGCCATCGCCGCGGGCGCCGTGTCAGCGCTCGCCGCGCTGCTGCTCTCCGCCGACCGCGACGACCTCGCCGG
GGACAGCGTCGCGCTGCTGGCGAGGATCGCCGAGCAGCCGTCTGGCGCCGCGGCCGTCCTCTCGCAGCCGGGGCTCGTCG
CCCGCCTCGCCGAGGCGCTCGCCGCGTCGTCGGCGTCGTCGTCCCGGTCGGCGAGAGACCACAGCGTGTCGCTCCTCGCC
TCGCTGTGCCGGCACGGCGGCGCCAAGGTGGTCGCCGTGCTGGGGCGGATGCCGGGGCTGATGGCGTCGCTCTACTCGCT
CGTCGCCGACGGCGGCAGCCCGCAGACGAGCAAGAAGGCGCGGGCGCTGCTCAACGAGATCCACCGGCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis