Browse Element(s) Details


OsAffx.29957.1.S1_at

Description tigr:9637.m01819
TID=OsAffx.29957.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glucosyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2116011/11UDP-glucoronosyl/UDP-glucosyl transferase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21120OsAffx.29955.1.S1_at11/119+12745594..12747732U-box domain containing protein
LOC_Os09g21130NANA9+12753490..12754265hypothetical protein
LOC_Os09g21140OsAffx.17819.1.S1_at11/119+12757361..12757741hypothetical protein
LOC_Os09g21150OsAffx.17820.1.S1_at11/119+12760129..12762148hypothetical protein
LOC_Os09g21160OsAffx.29957.2.S1_s_at11/119+12771638..12773119UDP-glucoronosyl/UDP-glucosyl transferase family protein, putative
LOC_Os09g21160OsAffx.29957.1.S1_x_at11/119+12771638..12773119UDP-glucoronosyl/UDP-glucosyl transferase family protein, putative
LOC_Os09g21160OsAffx.29957.1.S1_at11/119+12771638..12773119UDP-glucoronosyl/UDP-glucosyl transferase family protein, putative
LOC_Os09g21170OsAffx.29957.2.S1_s_at11/119+12776390..12777060homologous to glucosyltransferases, putative
LOC_Os09g21170OsAffx.29957.1.S1_x_at1/119+12776390..12777060homologous to glucosyltransferases, putative
LOC_Os09g21180OsAffx.29958.1.S1_at11/119+12779660..12782079Homeobox domain containing protein, expressed
LOC_Os09g21180OsAffx.29958.1.S1_x_at11/119+12779660..12782079Homeobox domain containing protein, expressed
LOC_Os09g21189OsAffx.8939.1.S1_x_at5/119+12787909..12788698NA
LOC_Os09g21189OsAffx.8939.1.S1_at2/119+12787909..12788698NA
LOC_Os09g21200NANA9+12789271..12791761hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29957.1.S1_at--987--8231Chr09:12772192..12772216 (25 bp)
GGCACGCTCATAGCCGTCCAGGAAG
LOC_Os09g21160
OsAffx.29957.1.S1_at--291--4831Chr09:12772187..12772211 (25 bp)
GCTCATAGCCGTCCAGGAAGCGCAG
LOC_Os09g21160
OsAffx.29957.1.S1_at--137--311Chr09:12772183..12772207 (25 bp)
ATAGCCGTCCAGGAAGCGCAGCTCA
LOC_Os09g21160
OsAffx.29957.1.S1_at--388--9231Chr09:12772176..12772200 (25 bp)
TCCAGGAAGCGCAGCTCAGGGAGCT
LOC_Os09g21160
OsAffx.29957.1.S1_at--1144--8511Chr09:12772125..12772149 (25 bp)
TGGACTTCCTCTGGGTAGTGCGGCC
LOC_Os09g21160
OsAffx.29957.1.S1_at--447--5691Chr09:12772123..12772147 (25 bp)
GACTTCCTCTGGGTAGTGCGGCCCA
LOC_Os09g21160
OsAffx.29957.1.S1_at--946--9251Chr09:12772119..12772143 (25 bp)
TCCTCTGGGTAGTGCGGCCCAGCGA
LOC_Os09g21160
OsAffx.29957.1.S1_at--1137--10051Chr09:12772110..12772134 (25 bp)
TAGTGCGGCCCAGCGACGCCGACGT
LOC_Os09g21160
OsAffx.29957.1.S1_at--1028--4531Chr09:12771841..12771865 (25 bp)
GCGACGACGGGTCACGGTGTGGTAA
LOC_Os09g21160
OsAffx.29957.1.S1_at--304--7091Chr09:12771831..12771855 (25 bp)
GTCACGGTGTGGTAAGCGGCGAGGA
LOC_Os09g21160
OsAffx.29957.1.S1_at--848--3491Chr09:12771776..12771800 (25 bp)
CATGGACGGCGAAGGAGAGAACGGC
LOC_Os09g21160
Target Sequence 
GGCACGCTCATAGCCGTCCAGGAAGCGCAGCTCAGGGAGCTCGCCGGCGGGCTGGAGGCGTCCGGCGTGGACTTCCTCTG
GGTAGTGCGGCCCAGCGACGCCGACGTCGGCGCCGGCTTCGAGGAGCGCGTGGAGGGGAGAGGACTGGTGGTGCGGGAGT
GGGTGGACCAATGGCGGATCCTGCGGCACGGCTGCGTGAAGGGGTTCCTCAGCCACTGCGGGTGGAACGCCGTGGTGGAG
GGCGTGGCCGCCGGCGTGCCGCTGGCGACGTGGCCGATGGGCGTCGAGCAGCCGCTCCACGCTACGCTCGCCGTCGACGA
GCTTAGGATCGGGGTCAGGGTGCCGGCGGCGGCGACGACGGGTCACGGTGTGGTAAGCGGCGAGGAGATCGCGCGCGTGG
CGAGGGAGCTGATGGGCATGGACGGCGAAGGAGAGAACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis