Browse Element(s) Details


OsAffx.17872.1.S1_s_at

Description tigr:9637.m02088
TID=OsAffx.17872.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2437011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24310OsAffx.30543.2.S1_at9/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24310OsAffx.30543.3.S1_at9/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24310OsAffx.30543.2.S1_x_at3/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24320Os.27516.1.A1_at11/119+14453727..144564542-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os09g24330NANA9+14462612..14463476protein kinase family protein, putative, expressed
LOC_Os09g24340OsAffx.29998.1.S1_x_at11/119+14466990..14468363protein kinase family protein, putative, expressed
LOC_Os09g24340OsAffx.29998.1.S1_at10/119+14466990..14468363protein kinase family protein, putative, expressed
LOC_Os09g24350Os.55213.1.S1_at10/119+14472051..14473027expressed protein
LOC_Os09g24359NANA9+14477208..14477505NA
LOC_Os09g24370OsAffx.17872.1.S1_s_at11/119+14478027..14478829expressed protein
LOC_Os09g24380NANA9+14491085..14493131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g24390NANA9+14494773..14499151Zinc knuckle family protein
LOC_Os09g24400Os.46986.1.S1_at1/119+14499315..14502565hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17872.1.S1_s_at--150--2871Chr09:14478488..14478512 (25 bp)
AAGTGCAAGACGTGCATCGCCACCT
LOC_Os09g24370
OsAffx.17872.1.S1_s_at--1042--6451Chr09:14478363..14478387 (25 bp)
GATCAATCGATCACGTCGTCGTCTC
LOC_Os09g24370
OsAffx.17872.1.S1_s_at--1157--6371Chr09:14478321..14478345 (25 bp)
GATCGATCGGTCGTTTTCACCTAAT
LOC_Os09g24370
OsAffx.17872.1.S1_s_at--316--3811Chr09:14478252..14478276 (25 bp)
CTCCCCAAGCTTCATGTATGCATAC
LOC_Os09g24370
OsAffx.17872.1.S1_s_at--1003--4971Chr09:14478225..14478249 (25 bp)
GCATCGTTAGTGCATGTGTCCCTGA
LOC_Os09g24370
OsAffx.17872.1.S1_s_at--580--791Chr09:14478212..14478236 (25 bp)
ATGTGTCCCTGATCATGGGTCTCTG
LOC_Os09g24370
OsAffx.17872.1.S1_s_at--1126--6431Chr09:14478181..14478205 (25 bp)
GATCATGTTGTGTCGTGTGTCGGCT
LOC_Os09g24370
OsAffx.17872.1.S1_s_at--562--4731Chr09:14478159..14478183 (25 bp)
GCTGTGTCTCGGTTATCGTCTTATC
LOC_Os09g24370
OsAffx.17872.1.S1_s_at--670--251Chr09:14478124..14478148 (25 bp)
ATATCGGCCAATTGTTGTCGCGCTG
LOC_Os09g24370
OsAffx.17872.1.S1_s_at--711--4571Chr09:14478105..14478129 (25 bp)
GCGCTGGCCACGTATATGTACTTGA
LOC_Os09g24370
OsAffx.17872.1.S1_s_at--805--1991Chr09:14478066..14478090 (25 bp)
ACTCCTAGGTCAATCTGTGTGTTCA
LOC_Os09g24370
Target Sequence 
AAGTGCAAGACGTGCATCGCCACCTGCGGGATCAAGTGCTTCCCCAAGGGAATCAAAGGCTTCCCCACCTGCTTCTTCGC
CTGCGTCTTCACCACCAGCAAGTGCTTCGCCTTCGGCGCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCAT
CAATCGCGATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAGAATAACGAATTAACCTCC
CCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGT
CGTGTGTCGGCTGTGTCTCGGTTATCGTCTTATCGATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATAT
GTACTTGATCGATGACCGAGAAACTCCTAGGTCAATCTGTGTGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17872.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis