Browse Element(s) Details


OsAffx.17972.1.S1_at

Description tigr:9637.m02770
TID=OsAffx.17972.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Polygalacturonase (pectinase), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3127011/11glycoside hydrolase family 28 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31220Os.17611.1.S1_at10/119+18778617..18781249expressed protein
LOC_Os09g31230Os.8446.1.S1_at10/119+18781976..18787014expressed protein
LOC_Os09g31240NANA9+18788586..18790289retrotransposon protein, putative, unclassified
LOC_Os09g31250Os.2500.1.S1_at1/119+18790869..18793691transposon protein, putative, unclassified
LOC_Os09g31260Os.5953.1.S1_s_at11/119+18798382..18799056expressed protein
LOC_Os09g31270OsAffx.17972.1.S1_at11/119+18800409..18802436glycoside hydrolase family 28 protein, putative, expressed
LOC_Os09g31280Os.15215.1.S1_at11/119+18804788..18807713OTU-like cysteine protease family protein, putative, expressed
LOC_Os09g31290OsAffx.6462.1.S1_at11/119+18810700..18811891hypothetical protein
LOC_Os09g31300Os.20361.1.A1_at11/119+18813191..18816005Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g31310Os.51627.1.A1_at11/119+18824515..18825255acetyltransferase, GNAT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17972.1.S1_at--928--671Chr09:18800917..18800941 (25 bp)
ATGAGCACCAGGTACTACCATCCTT
LOC_Os09g31270
OsAffx.17972.1.S1_at--292--7651Chr09:18800884..18800908 (25 bp)
GGGAGAGCTGAACCGATCTACATCA
LOC_Os09g31270
OsAffx.17972.1.S1_at--490--7271Chr09:18800853..18800877 (25 bp)
GTCCAAGGCACCCAGATTCCAAAGA
LOC_Os09g31270
OsAffx.17972.1.S1_at--1000--5291Chr09:18800830..18800854 (25 bp)
GAAGGCACCATTTCAGACATTCAGT
LOC_Os09g31270
OsAffx.17972.1.S1_at--709--6731Chr09:18800807..18800831 (25 bp)
GTTCATCAACATCTCATCGGTATCA
LOC_Os09g31270
OsAffx.17972.1.S1_at--2--5271Chr09:18800723..18800747 (25 bp)
GAATGTCGACCTAACCTACAAGAGA
LOC_Os09g31270
OsAffx.17972.1.S1_at--464--6231Chr09:18800700..18800724 (25 bp)
GATGGACAAACTACTCGGGAGGGCT
LOC_Os09g31270
OsAffx.17972.1.S1_at--193--2951Chr09:18800553..18800577 (25 bp)
AAGGCTGGGATGTTGATCCTCTCCT
LOC_Os09g31270
OsAffx.17972.1.S1_at--995--7131Chr09:18800501..18800525 (25 bp)
GTCATTCCATGACTGGCAATCGCTG
LOC_Os09g31270
OsAffx.17972.1.S1_at--768--5191Chr09:18800486..18800510 (25 bp)
GCAATCGCTGGCTGTCAGTAGGTAA
LOC_Os09g31270
OsAffx.17972.1.S1_at--870--1351Chr09:18800457..18800481 (25 bp)
AGAGCAAGCCTACTGAACATCACAT
LOC_Os09g31270
Target Sequence 
ATGAGCACCAGGTACTACCATCCTTTATGGTGGGGGAGAGCTGAACCGATCTACATCACCACATGTCCAAGGCACCCAGA
TTCCAAAGAAGGCACCATTTCAGACATTCAGTTCATCAACATCTCATCGGTATCAGAAAACGGAGTATTCTTGGCTGGAT
CGAAGCACGGGCTGCTTCGCAACCTGAAGTTCAAGAATGTCGACCTAACCTACAAGAGATGGACAAACTACTCGGGAGGG
CTGTATGATTACAGGCCTGGATGCCAAAAGATGGTGAAGCACCGAACCGGTGGTATGATGCTGGAGCACATCTCTGGCCT
TGAGATCGACAATGTGAGGATGAGATGGTCAAGAGGAAGCCTCAAAGGCTGGGATGTTGATCCTCTCCTCTTCCAGCCAT
CGACAGTCGACAAGCTGTCATTCCATGACTGGCAATCGCTGGCTGTCAGTAGGTAATGGAAGAGCAAGCCTACTGAACAT
CACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis