Browse Element(s) Details


OsAffx.17991.1.S1_at

Description tigr:9637.m02939
TID=OsAffx.17991.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=sterol dehydrogenase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3409010/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34060Os.54250.1.S1_at11/119+20093715..20098128Transcription factor RF2a, putative, expressed
LOC_Os09g34070Os.20697.1.S1_at11/119+20106823..20114088RNA recognition motif family protein, expressed
LOC_Os09g34070Os.38098.1.S1_at2/119+20106823..20114088RNA recognition motif family protein, expressed
LOC_Os09g34080OsAffx.30133.1.S1_at11/119+20115557..20116111hypothetical protein
LOC_Os09g34090OsAffx.17991.1.S1_at10/119+20116966..20121182NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g34100Os.14721.1.S1_at11/119+20121867..20126934Hydroxyacylglutathione hydrolase 2, mitochondrial precursor, putative, expressed
LOC_Os09g34110Os.47933.1.S1_at11/119+20127720..20133877expressed protein
LOC_Os09g34120OsAffx.30134.1.S1_at11/119+20145330..20145839expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006694biological_processsteroid biosynthesis
GO:0003854molecular_function3-beta-hydroxy-delta5-steroid dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17991.1.S1_at--801--2551NONE
AACTGCTGATATTCTCCTTTGGAGG
NONE
OsAffx.17991.1.S1_at--769--7091Chr09:20118691..20118715 (25 bp)
GTCACAGTATTGTTTCTGCTGTTCT
LOC_Os09g34090
OsAffx.17991.1.S1_at--734--8791Chr09:20118672..20118696 (25 bp)
TGTTCTACTGGTTTCTGCTTTCCGA
LOC_Os09g34090
OsAffx.17991.1.S1_at--881--4871Chr09:20118656..20118680 (25 bp)
GCTTTCCGACAGAACTTTTGTCTCG
LOC_Os09g34090
OsAffx.17991.1.S1_at--1097--8711Chr09:20118638..20118662 (25 bp)
TGTCTCGTCAGCTGCCAAAATTCTT
LOC_Os09g34090
OsAffx.17991.1.S1_at--722--10551Chr09:20118618..20118642 (25 bp)
TTCTTCTGGTGATCTCGCTGGCACT
LOC_Os09g34090
OsAffx.17991.1.S1_at--928--4711Chr09:20118602..20118626 (25 bp)
GCTGGCACTTTTCATCCATGGCGTG
LOC_Os09g34090
OsAffx.17991.1.S1_at--302--871Chr09:20118586..20118609 (24 bp)
ATGGCGTGCTGCCTCCACAAGTGTT
LOC_Os09g34090
OsAffx.17991.1.S1_at--601--2211Chr09:20118389..20118593 (25 bp)
ACAAGTGTTCGGTTTCACAGTTGAG
LOC_Os09g34090
OsAffx.17991.1.S1_at--787--8371Chr09:20118253..20118277 (25 bp)
GGCGATGACTGGACTACGTTTCTAA
LOC_Os09g34090
OsAffx.17991.1.S1_at--1070--2931Chr09:20117699..20117722 (24 bp)
AAGGCATTTGCATTCTTGTACTGTG
LOC_Os09g34090
Target Sequence 
AACTGCTGATATTCTCCTTTGGAGGGATGAAAAGAAAACATTTTCATATGTCACAGTATTGTTTCTGCTGTTCTACTGGT
TTCTGCTTTCCGACAGAACTTTTGTCTCGTCAGCTGCCAAAATTCTTCTGGTGATCTCGCTGGCACTTTTCATCCATGGC
GTGCTGCCTCCACAAGTGTTCGGTTTCACAGTTGAGAAGGTTACTTCTGATTATTTTGAAGTATCACAAGAAACATTGAA
GAATACACTTGTGTGGATGGCTTCTATATGGAATGGAGGCATTTATAAATTGAGGGTTTTAGCAGAAGGCGATGACTGGA
CTACGTTTCTAAAGGCATTTGCATTCTTGTACTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis