Browse Element(s) Details


OsAffx.18163.1.S1_at

Description tigr:9638.m00620
TID=OsAffx.18163.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC116600 Putative chalcone synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0704011/11Chalcone synthase 8, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07030OsAffx.6598.1.S1_at11/1110+3667978..3669950hypothetical protein
LOC_Os10g07040OsAffx.18163.1.S1_at11/1110+3680945..3682922Chalcone synthase 8, putative
LOC_Os10g07050OsAffx.20723.1.S1_x_at11/1110+3685751..3687513hypothetical protein
LOC_Os10g07060NANA10+3700566..3701397B3 DNA binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009715biological_processchalcone biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009926biological_processauxin polar transport
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016210molecular_functionnaringenin-chalcone synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18163.1.S1_at--298--3071Chr10:3682358..3682382 (25 bp)
AATCATTGGCCATGGACTGTTCGGG
LOC_Os10g07040
OsAffx.18163.1.S1_at--404--7291Chr10:3682408..3682432 (25 bp)
GTGCCGATCCCTCAGTCGATGGTGA
LOC_Os10g07040
OsAffx.18163.1.S1_at--1082--1131Chr10:3682421..3682445 (25 bp)
AGTCGATGGTGAGTGCCCGCTATTC
LOC_Os10g07040
OsAffx.18163.1.S1_at--690--4871Chr10:3682439..3682463 (25 bp)
GCTATTCGAGATGGTTGCCGCCTCA
LOC_Os10g07040
OsAffx.18163.1.S1_at--152--7531Chr10:3682516..3682540 (25 bp)
GTGGAATAGATTTTCACCTCTCCAT
LOC_Os10g07040
OsAffx.18163.1.S1_at--454--411Chr10:3682573..3682597 (25 bp)
ATCAGTGCTTGCTCAATGCGTTTCG
LOC_Os10g07040
OsAffx.18163.1.S1_at--993--4831Chr10:3682583..3682607 (25 bp)
GCTCAATGCGTTTCGATCTGTTGGA
LOC_Os10g07040
OsAffx.18163.1.S1_at--677--3971Chr10:3682655..3682679 (25 bp)
CGGTCGCGCAATCCTTGATAACATA
LOC_Os10g07040
OsAffx.18163.1.S1_at--363--1451Chr10:3682679..3682703 (25 bp)
AGAAGACAAGCTCCAACTGCATCCA
LOC_Os10g07040
OsAffx.18163.1.S1_at--564--1971Chr10:3682694..3682718 (25 bp)
ACTGCATCCATGTAAGCTTGCGGCA
LOC_Os10g07040
OsAffx.18163.1.S1_at--902--3091Chr10:3682868..3682892 (25 bp)
AATAGAGTCAATCGTGCTGCGTAAC
LOC_Os10g07040
Target Sequence 
AATCATTGGCCATGGACTGTTCGGGGATGGTGCTGGCGCAGTCATCGTCGGTGCCGATCCCTCAGTCGATGGTGAGTGCC
CGCTATTCGAGATGGTTGCCGCCTCACAAACCATGATACCAGGAACCGAGCACGCGCTCGGCATGCAGGCCACTAGTAGT
GGAATAGATTTTCACCTCTCCATCCAGGTGCCGACACTGATAAAGGACAACATCCATCAGTGCTTGCTCAATGCGTTTCG
ATCTGTTGGAAACACAGATCCTAACTGGAACGACCTCTTCTGGGCAGTGCACCCTGGCGGTCGCGCAATCCTTGATAACA
TAGAAGACAAGCTCCAACTGCATCCATGTAAGCTTGCGGCAAGCCGCCAAGTGTTGAGCGAGTACGGGAACATGAGTGGT
GCAACAATTGCATTCGTTCTTGATGAACTACGGCGCCGTCGGGAGAAGGAACAAGACATACAGCAACAACCTGAGTGGGG
AGTGTTGCTGGCCTTTGGACCTGGAGTCACAATAGAGTCAATCGTGCTGCGTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis