Browse Element(s) Details


OsAffx.18256.1.S1_at

Description tigr:9638.m01306
TID=OsAffx.18256.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1515011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15120NANA10+7685199..7685594hypothetical protein
LOC_Os10g15130OsAffx.22385.1.S1_x_at11/1110+7686171..7689131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g15140NANA10+7690248..7690679hypothetical protein
LOC_Os10g15150OsAffx.18256.1.S1_at11/1110+7699177..7699977hypothetical protein
LOC_Os10g15160OsAffx.18257.1.S1_x_at11/1110+7704396..7704704serine/threonine protein kinase, putative
LOC_Os10g15164Os.14497.1.S1_at11/1110+7709036..7713467expressed protein
LOC_Os10g15164Os.13728.1.S1_at5/1110+7709036..7713467expressed protein
LOC_Os10g15170NANA10+7714330..7717729retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g15180NANA10+7718976..7721846retrotransposon protein, putative, unclassified
LOC_Os10g15190NANA10+7722733..7723759hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18256.1.S1_at--938--1311Chr10:7699379..7699403 (25 bp)
AGATGGCGGCAAAGACGGTCGCAAT
LOC_Os10g15150
OsAffx.18256.1.S1_at--1123--4111Chr10:7699398..7699422 (25 bp)
CGCAATGGAAGCAACAGCACGTGTT
LOC_Os10g15150
OsAffx.18256.1.S1_at--355--7391Chr10:7699424..7699448 (25 bp)
GTGAGAATGGCCAGATCCGGCTACC
LOC_Os10g15150
OsAffx.18256.1.S1_at--227--6412Chr10:7699508..7699532 (25 bp)
GATCTGGCAGTGGTGAGGCCACACC
LOC_Os10g15150
OsAffx.18256.1.S1_at--343--7771Chr10:7699639..7699663 (25 bp)
GGTGACTTCGGCACTGGCCCACGAG
LOC_Os10g15150
OsAffx.18256.1.S1_at--358--7411Chr10:7699687..7699711 (25 bp)
GTGATAGCACAAACTCTCTCGTCGT
LOC_Os10g15150
OsAffx.18256.1.S1_at--86--8191Chr10:7699749..7699773 (25 bp)
GGAAGGCCTTCTCCATAGTTGTCGG
LOC_Os10g15150
OsAffx.18256.1.S1_at--837--10031Chr10:7699764..7699788 (25 bp)
TAGTTGTCGGCAGCCACCTAACCTA
LOC_Os10g15150
OsAffx.18256.1.S1_at--480--4311Chr10:7699808..7699832 (25 bp)
CCTTCTGCAAGGAGCTTCATTGGGA
LOC_Os10g15150
OsAffx.18256.1.S1_at--54--411Chr10:7699854..7699878 (25 bp)
ATCAGGGATAGTCTTGGGCTGCCAA
LOC_Os10g15150
OsAffx.18256.1.S1_at--951--10071Chr10:7699890..7699914 (25 bp)
TAGGTCCTGGCTCATCTTGGCCAGA
LOC_Os10g15150
Target Sequence 
AGATGGCGGCAAAGACGGTCGCAATGGAAGCAACAGCACGTGTTGGTGAGAATGGCCAGATCCGGCTACCCTATGGTCAC
ATCCAGTCTCCTCTCGGCCAGATCAGGGGCGTTGGGTGGCTTCGGCGCGGATCTGGCAGTGGTGAGGCCACACCAGCGTT
GGCAGCGGAGAGGTTGCTAGTGAGTGGCGAGGTGGCGGCAAGGCAGTGGTACGGTGATGTCGGTGGTGATCGTCGAGGCC
GCCAGTGGGCTTGGCGGTGCGGTGACTTCGGCACTGGCCCACGAGGTGGTCGACGGGCTGGCTGGACAGTGATAGCACAA
ACTCTCTCGTCGTGGAGGTGGCAATCGAGCGTGTTGGCTGGGAGTTTGATGGAAGGCCTTCTCCATAGTTGTCGGCAGCC
ACCTAACCTACCAGTGGAGCTCCTCACCTCCTTCTGCAAGGAGCTTCATTGGGAGGTCGAAGGAGGCATATTGACATCAG
GGATAGTCTTGGGCTGCCAAGGCATCGCCCCTAGGTCCTGGCTCATCTTGGCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis