Browse Element(s) Details


OsAffx.18257.1.S1_x_at

Description tigr:9638.m01307
TID=OsAffx.18257.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1516011/11serine/threonine protein kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15120NANA10+7685199..7685594hypothetical protein
LOC_Os10g15130OsAffx.22385.1.S1_x_at11/1110+7686171..7689131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g15140NANA10+7690248..7690679hypothetical protein
LOC_Os10g15150OsAffx.18256.1.S1_at11/1110+7699177..7699977hypothetical protein
LOC_Os10g15160OsAffx.18257.1.S1_x_at11/1110+7704396..7704704serine/threonine protein kinase, putative
LOC_Os10g15164Os.14497.1.S1_at11/1110+7709036..7713467expressed protein
LOC_Os10g15164Os.13728.1.S1_at5/1110+7709036..7713467expressed protein
LOC_Os10g15170NANA10+7714330..7717729retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g15180NANA10+7718976..7721846retrotransposon protein, putative, unclassified
LOC_Os10g15190NANA10+7722733..7723759hypothetical protein
LOC_Os10g15200NANA10+7727030..7727641retrotransposon, putative, centromere-specific
LOC_Os10g15210NANA10+7729358..7734672retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009926biological_processauxin polar transport
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18257.1.S1_x_at--984--9371Chr10:7704460..7704484 (25 bp)
TCGAGTTTCTGCACATGATGGGCAT
LOC_Os10g15160
OsAffx.18257.1.S1_x_at--552--2111Chr10:7704472..7704496 (25 bp)
ACATGATGGGCATCGCGGCAGAGCC
LOC_Os10g15160
OsAffx.18257.1.S1_x_at--1102--4971Chr10:7704481..7704505 (25 bp)
GCATCGCGGCAGAGCCAGTGCACGC
LOC_Os10g15160
OsAffx.18257.1.S1_x_at--1094--1112Chr10:7704497..7704521 (25 bp)
AGTGCACGCACGGTCGAGCTCGTTC
LOC_Os10g15160
OsAffx.18257.1.S1_x_at--202--1851Chr10:7704528..7704552 (25 bp)
ACGCACGAGTATATGGCGCCGGATG
LOC_Os10g15160
OsAffx.18257.1.S1_x_at--785--271Chr10:7704538..7704562 (25 bp)
ATATGGCGCCGGATGTGGCACGCGG
LOC_Os10g15160
OsAffx.18257.1.S1_x_at--158--7551Chr10:7704562..7704586 (25 bp)
GTGGCGGGCACGACGTAGGCATGGA
LOC_Os10g15160
OsAffx.18257.1.S1_x_at--932--1871Chr10:7704574..7704598 (25 bp)
ACGTAGGCATGGACTGGTGGTCATA
LOC_Os10g15160
OsAffx.18257.1.S1_x_at--962--9991Chr10:7704597..7704621 (25 bp)
TATGGCATGGAGTTCCCCTCGGCCG
LOC_Os10g15160
OsAffx.18257.1.S1_x_at--372--1831Chr10:7704640..7704664 (25 bp)
ACGCCGCGACGCGAGACATGATTTG
LOC_Os10g15160
OsAffx.18257.1.S1_x_at--634--1831Chr10:7704648..7704672 (25 bp)
ACGCGAGACATGATTTGCGCGACGA
LOC_Os10g15160
Target Sequence 
TCGAGTTTCTGCACATGATGGGCATCGCGGCAGAGCCAGTGCACGCACGGTCGAGCTCGTTCGTCGGCACGCACGAGTAT
ATGGCGCCGGATGTGGCACGCGGTGGCGGGCACGACGTAGGCATGGACTGGTGGTCATATGGCATGGAGTTCCCCTCGGC
CGTCGCTGCCTCGCCGCACGACGCCGCGACGCGAGACATGATTTGCGCGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18257.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis