Browse Element(s) Details


OsAffx.18470.1.S1_at

Description tigr:9638.m02682
TID=OsAffx.18470.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3110011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31070OsAffx.8071.1.S1_at11/1110+15930117..15930680hypothetical protein
LOC_Os10g31080OsAffx.20300.1.S1_at10/1110+15931565..15940944retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31080OsAffx.24861.1.S1_at8/1110+15931565..15940944retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31090OsAffx.30620.1.S1_at10/1110+15942570..15943039hypothetical protein
LOC_Os10g31100OsAffx.18470.1.S1_at11/1110+15947642..15948010hypothetical protein
LOC_Os10g31110OsAffx.30621.1.S1_at11/1110+15961122..15961594hypothetical protein
LOC_Os10g31110OsAffx.29973.1.S1_at1/1110+15961122..15961594hypothetical protein
LOC_Os10g31120OsAffx.8070.1.S1_x_at8/1110+15965493..15967757transposon protein, putative, Pong sub-class
LOC_Os10g31130OsAffx.21778.2.S1_x_at3/1110+15968207..15969133transposon protein, putative, Pong sub-class
LOC_Os10g31139NANA10+15970007..15970429NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18470.1.S1_at--606--6811Chr10:15947954..15947978 (25 bp)
GTTTATGACAACCTTCATGGAGCTC
LOC_Os10g31100
OsAffx.18470.1.S1_at--85--8971Chr10:15947949..15947973 (25 bp)
TGACAACCTTCATGGAGCTCATAAG
LOC_Os10g31100
OsAffx.18470.1.S1_at--191--5911Chr10:15947935..15947959 (25 bp)
GAGCTCATAAGGCTCATGATACAGC
LOC_Os10g31100
OsAffx.18470.1.S1_at--1061--351Chr10:15947929..15947953 (25 bp)
ATAAGGCTCATGATACAGCAGTTGA
LOC_Os10g31100
OsAffx.18470.1.S1_at--875--6471Chr10:15947918..15947942 (25 bp)
GATACAGCAGTTGAACCAGCAACAA
LOC_Os10g31100
OsAffx.18470.1.S1_at--726--2491Chr10:15947895..15947919 (25 bp)
AACAGGGAAATGATGCTCAGGCAGC
LOC_Os10g31100
OsAffx.18470.1.S1_at--795--3191Chr10:15947699..15947891 (25 bp)
CAATGACACAATGAACACCGGGCTT
LOC_Os10g31100
OsAffx.18470.1.S1_at--880--5611Chr10:15947695..15947887 (25 bp)
GACACAATGAACACCGGGCTTCGAG
LOC_Os10g31100
OsAffx.18470.1.S1_at--326--5491Chr10:15947687..15947709 (23 bp)
GAACACCGGGCTTCGAGTTGAGCAT
LOC_Os10g31100
OsAffx.18470.1.S1_at--1075--1771Chr10:15947683..15947707 (25 bp)
ACCGGGCTTCGAGTTGAGCATCCAA
LOC_Os10g31100
OsAffx.18470.1.S1_at--194--1251Chr10:15947672..15947696 (25 bp)
AGTTGAGCATCCAAACCGGTTGTCG
LOC_Os10g31100
Target Sequence 
GTTTATGACAACCTTCATGGAGCTCATAAGGCTCATGATACAGCAGTTGAACCAGCAACAACAGGGAAATGATGCTCAGG
CAGCCAACAATGACACAATGAACACCGGGCTTCGAGTTGAGCATCCAAACCGGTTGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis