Browse Element(s) Details


OsAffx.30620.1.S1_at

Description tigr:9638.m02681
TID=OsAffx.30620.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3109010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31060NANA10+15916405..15917842transposon protein, putative, unclassified
LOC_Os10g31070OsAffx.8071.1.S1_at11/1110+15930117..15930680hypothetical protein
LOC_Os10g31080OsAffx.20300.1.S1_at10/1110+15931565..15940944retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31080OsAffx.24861.1.S1_at8/1110+15931565..15940944retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31090OsAffx.30620.1.S1_at10/1110+15942570..15943039hypothetical protein
LOC_Os10g31100OsAffx.18470.1.S1_at11/1110+15947642..15948010hypothetical protein
LOC_Os10g31110OsAffx.30621.1.S1_at11/1110+15961122..15961594hypothetical protein
LOC_Os10g31110OsAffx.29973.1.S1_at1/1110+15961122..15961594hypothetical protein
LOC_Os10g31120OsAffx.8070.1.S1_x_at8/1110+15965493..15967757transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30620.1.S1_at--267--1271Chr10:15942602..15942626 (25 bp)
AGATGAAGGCCCACGAGGATCGCCC
LOC_Os10g31090
OsAffx.30620.1.S1_at--692--7271Chr10:15942633..15942657 (25 bp)
GTGCCAACTATGGAGTTCGCATCAC
LOC_Os10g31090
OsAffx.30620.1.S1_at--267--8931Chr10:15942674..15942698 (25 bp)
TGACCTCGACAATGTTCGCGACGAT
LOC_Os10g31090
OsAffx.30620.1.S1_at--739--4051Chr10:15942695..15942719 (25 bp)
CGATGCCCTTGTTCATTTCCGCAAG
LOC_Os10g31090
OsAffx.30620.1.S1_at--295--611NONE
ATGCGTTGTTCGCATCACCACCAAG
NONE
OsAffx.30620.1.S1_at--548--8931Chr10:15942841..15942865 (25 bp)
TGACCTCGACAATTATCGCGATGAT
LOC_Os10g31090
OsAffx.30620.1.S1_at--1002--8851Chr10:15942862..15942886 (25 bp)
TGATGCCCTTGTTCATTTCCGCGAA
LOC_Os10g31090
OsAffx.30620.1.S1_at--784--6331Chr10:15942738..15942762 (25 bp)
GATGCGTTGGTACCTAGGTTAGCAC
LOC_Os10g31090
OsAffx.30620.1.S1_at--1005--5771Chr10:15942944..15942968 (25 bp)
GACGAGCTGCACACTGGTAGCGTTA
LOC_Os10g31090
OsAffx.30620.1.S1_at--392--10191Chr10:15942966..15942990 (25 bp)
TTAAAGAACTCGCTACATTCGTAGT
LOC_Os10g31090
OsAffx.30620.1.S1_at--135--10631Chr10:15942983..15943007 (25 bp)
TTCGTAGTAGCTGAGCGGGAGCCAT
LOC_Os10g31090
Target Sequence 
AGATGAAGGCCCACGAGGATCGCCCCCTACTGTGCCAACTATGGAGTTCGCATCACCACCAAGCATGAACCCTGACCTCG
ACAATGTTCGCGACGATGCCCTTGTTCATTTCCGCAAGATGGAAAATGTTCTTGGTGATGCGTTGTTCGCATCACCACCA
AGCATGAACCCTGACCTCGACAATTATCGCGATGATGCCCTTGTTCATTTCCGCGAAATGGAAAACGTTCTTGGTGATGC
GTTGGTACCTAGGTTAGCACAACAAGAGCTCGGGGACGAGCTGCACACTGGTAGCGTTAAAGAACTCGCTACATTCGTAG
TAGCTGAGCGGGAGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis