Browse Element(s) Details


OsAffx.18779.1.S1_at

Description tigr:9639.m00967
TID=OsAffx.18779.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1025010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10210NANA11+5536014..5536490hypothetical protein
LOC_Os11g10220NANA11+5542304..5543858retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10230Os.2987.3.S1_x_at1/1111+5545600..5548415retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os11g10240Os.52549.1.S1_s_at11/1111+5552766..5555631F-box domain containing protein, expressed
LOC_Os11g10240Os.52549.1.S1_at9/1111+5552766..5555631F-box domain containing protein, expressed
LOC_Os11g10250Os.54679.1.S1_at11/1111+5558304..5563759expressed protein
LOC_Os11g10250OsAffx.18779.1.S1_at10/1111+5558304..5563759expressed protein
LOC_Os11g10250Os.52549.1.S1_s_at1/1111+5558304..5563759expressed protein
LOC_Os11g10260NANA11+5564981..5572514retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10270NANA11+5573437..5574183retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10280Os.2436.1.S1_at4/1111+5575562..5578033D-mannose binding lectin family protein
LOC_Os11g10290Os.2436.1.S1_at10/1111+5581963..5584666D-mannose binding lectin family protein, expressed
LOC_Os11g10300OsAffx.31999.3.S1_at11/1111+5586100..5587921F-box domain containing protein
LOC_Os11g10300Os.54112.1.S1_at1/1111+5586100..5587921F-box domain containing protein
LOC_Os11g10310Os.49827.1.S1_at11/1111+5588030..5598545Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18779.1.S1_at--880--1531Chr11:5562294..5562318 (25 bp)
AGCTTGTATTCTCAAGAAGTCACCA
LOC_Os11g10250
OsAffx.18779.1.S1_at--396--3711Chr11:5562266..5562290 (25 bp)
CTAGAGAATTTCACTCTTCAAATTT
LOC_Os11g10250
OsAffx.18779.1.S1_at--871--371NONE
ATCGATCTACAAAACTTAAGGCCAT
NONE
OsAffx.18779.1.S1_at--527--9831Chr11:5558656..5558680 (25 bp)
TAAACTCACCACCAGATGAGGGAGA
LOC_Os11g10250
OsAffx.18779.1.S1_at--740--7751Chr11:5558625..5558649 (25 bp)
GGTGTTAGCTGACCTCAATGAGCAA
LOC_Os11g10250
OsAffx.18779.1.S1_at--874--9731Chr11:5558611..5558635 (25 bp)
TCAATGAGCAACTTAGCCCTGCGGT
LOC_Os11g10250
OsAffx.18779.1.S1_at--231--3271Chr11:5558603..5558627 (25 bp)
CAACTTAGCCCTGCGGTTCAGGAAG
LOC_Os11g10250
OsAffx.18779.1.S1_at--244--6151Chr11:5558524..5558548 (25 bp)
GAGGTGCCAACCATGCTGTGCATCC
LOC_Os11g10250
OsAffx.18779.1.S1_at--1120--611Chr11:5558512..5558536 (25 bp)
ATGCTGTGCATCCTTTTGATCTCAA
LOC_Os11g10250
OsAffx.18779.1.S1_at--785--6291Chr11:5558363..5558387 (25 bp)
GATGATCTGTGCCTTATAGAGCTTA
LOC_Os11g10250
OsAffx.18779.1.S1_at--932--9892Chr09:1996986..1997290 (25 bp)
TACTCAACATATTTTTGCAGTCTTC
NONE
Target Sequence 
AGCTTGTATTCTCAAGAAGTCACCAGTTCTAGAGAATTTCACTCTTCAAATTTCCAAGGACACTAAATCTATGATAGAGA
CAGAAGAAAATTACAACGTATTAGTGAAACCGGTTGTAACATCAAAACATCTAAAGGTAGTGAAAGTCCACTGTACAGAA
GTTGATGAGGGCGTTTACAAAATTGTGAAGTTCTTGACTACATTGAACATAGAAGTTATTATGAAAAGGATGGATCGATC
TACAAAACTTAAGGCCATAGATCTAAACTCACCACCAGATGAGGGAGATACAGAGGTGTTAGCTGACCTCAATGAGCAAC
TTAGCCCTGCGGTTCAGGAAGAAGATCAAAACCATGGTGTCCAGGATGATGAACATGTTGGAATTGGTGTCCAGGGAGGT
GCCAACCATGCTGTGCATCCTTTTGATCTCAACCCTGATGCCTCTGAGCAGCAACAAGAAATACATCCAGATGATCTATT
AGATGATCTGTGCCTTATAGAGCTTATTATACTCAACATATTTTTGCAGTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis