Browse Element(s) Details


OsAffx.18799.1.S1_s_at

Description tigr:9639.m01086
TID=OsAffx.18799.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=auxin-induced protein IAA18 (imported) - Arabidopsis thaliana (fragment)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1143011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11400OsAffx.18798.1.S1_at11/1111+6327183..6327572hypothetical protein
LOC_Os11g11410Os.54127.1.S1_at11/1111+6331361..6337777AUX/IAA family protein, expressed
LOC_Os11g11420OsAffx.18799.1.S1_at10/1111+6343960..6345226IAA18, putative
LOC_Os11g11430OsAffx.18799.1.S1_at11/1111+6352091..6353868expressed protein
LOC_Os11g11430OsAffx.18799.1.S1_s_at11/1111+6352091..6353868expressed protein
LOC_Os11g11440OsAffx.18800.1.S1_s_at11/1111+6354529..6355370protein disulfide isomerase, putative
LOC_Os11g11450OsAffx.7078.1.S1_at11/1111+6357337..6358020hypothetical protein
LOC_Os11g11460OsAffx.18801.1.S1_at11/1111+6367344..6367937hypothetical protein
LOC_Os11g11480OsAffx.7079.1.S1_at11/1111+6372615..6373329hypothetical protein
LOC_Os11g11490NANA11+6377720..6380809Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0010102biological_processlateral root morphogenesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18799.1.S1_s_at--397--6511Chr11:6353668..6353692 (25 bp)
GATATAGCTACATGGCTATCGCAAG
LOC_Os11g11430
OsAffx.18799.1.S1_s_at--788--1571Chr11:6353673..6353697 (25 bp)
AGCTACATGGCTATCGCAAGCATAG
LOC_Os11g11430
OsAffx.18799.1.S1_s_at--311--5171Chr11:6353688..6353712 (25 bp)
GCAAGCATAGCTGCAACCGCGTCAT
LOC_Os11g11430
OsAffx.18799.1.S1_s_at--1048--3991Chr11:6353715..6353739 (25 bp)
CGTCCAATCTATCTATCTCCAATAA
LOC_Os11g11430
OsAffx.18799.1.S1_s_at--318--3191Chr11:6353734..6353758 (25 bp)
CAATAATTAATTCTCTGCCGCTTTT
LOC_Os11g11430
OsAffx.18799.1.S1_s_at--311--3151Chr11:6353742..6353766 (25 bp)
AATTCTCTGCCGCTTTTAATTAGCT
LOC_Os11g11430
OsAffx.18799.1.S1_s_at--985--9511Chr11:6353745..6353769 (25 bp)
TCTCTGCCGCTTTTAATTAGCTCCA
LOC_Os11g11430
OsAffx.18799.1.S1_s_at--1122--231Chr11:6353771..6353795 (25 bp)
ATATATGCTGCTACCATCATCCGTT
LOC_Os11g11430
OsAffx.18799.1.S1_s_at--229--9091Chr11:6353779..6353803 (25 bp)
TGCTACCATCATCCGTTGTTGCTAC
LOC_Os11g11430
OsAffx.18799.1.S1_s_at--392--551Chr11:6353789..6353813 (25 bp)
ATCCGTTGTTGCTACCCTTGTAAGA
LOC_Os11g11430
OsAffx.18799.1.S1_s_at--1029--6631Chr11:6353796..6353820 (25 bp)
GTTGCTACCCTTGTAAGAGACTAAT
LOC_Os11g11430
Target Sequence 
GATATAGCTACATGGCTATCGCAAGCATAGCTGCAACCGCGTCATCTCGTCCAATCTATCTATCTCCAATAATTAATTCT
CTGCCGCTTTTAATTAGCTCCATATATATGCTGCTACCATCATCCGTTGTTGCTACCCTTGTAAGAGACTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18799.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis