Browse Element(s) Details


OsAffx.18800.1.S1_s_at

Description tigr:9639.m01087
TID=OsAffx.18800.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to PDI-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1144011/11protein disulfide isomerase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11410Os.54127.1.S1_at11/1111+6331361..6337777AUX/IAA family protein, expressed
LOC_Os11g11420OsAffx.18799.1.S1_at10/1111+6343960..6345226IAA18, putative
LOC_Os11g11430OsAffx.18799.1.S1_at11/1111+6352091..6353868expressed protein
LOC_Os11g11430OsAffx.18799.1.S1_s_at11/1111+6352091..6353868expressed protein
LOC_Os11g11440OsAffx.18800.1.S1_s_at11/1111+6354529..6355370protein disulfide isomerase, putative
LOC_Os11g11450OsAffx.7078.1.S1_at11/1111+6357337..6358020hypothetical protein
LOC_Os11g11460OsAffx.18801.1.S1_at11/1111+6367344..6367937hypothetical protein
LOC_Os11g11480OsAffx.7079.1.S1_at11/1111+6372615..6373329hypothetical protein
LOC_Os11g11490NANA11+6377720..6380809Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18800.1.S1_s_at--1130--271Chr11:6355168..6355192 (25 bp)
ATAGATGTGTCCCTCACCTTGGAGT
LOC_Os11g11440
OsAffx.18800.1.S1_s_at--813--6091Chr11:6355147..6355171 (25 bp)
GAGTCTCTGATGGTCTCCGGTGATC
LOC_Os11g11440
OsAffx.18800.1.S1_s_at--471--6251Chr11:6355139..6355163 (25 bp)
GATGGTCTCCGGTGATCTGTACTTC
LOC_Os11g11440
OsAffx.18800.1.S1_s_at--188--6411Chr11:6355126..6355150 (25 bp)
GATCTGTACTTCGTCGTTGGTAAGG
LOC_Os11g11440
OsAffx.18800.1.S1_s_at--56--5511Chr11:6355010..6355120 (25 bp)
GAAAAAGTTCCGGTGGCGTGGCTCG
LOC_Os11g11440
OsAffx.18800.1.S1_s_at--1021--951Chr11:6354980..6355004 (25 bp)
AGGACTGGCCTGCTCTACTTCTCAG
LOC_Os11g11440
OsAffx.18800.1.S1_s_at--770--1951Chr11:6354952..6354976 (25 bp)
ACTGGTGCAGTCCATGCCGGAAATT
LOC_Os11g11440
OsAffx.18800.1.S1_s_at--985--5591Chr11:6354933..6354957 (25 bp)
GAAATTCCTCCCTAAGCTCATCGAG
LOC_Os11g11440
OsAffx.18800.1.S1_s_at--1010--1111Chr11:6354878..6354902 (25 bp)
AGTGACGTTGAGGTCGTCTTCGTCT
LOC_Os11g11440
OsAffx.18800.1.S1_s_at--604--7171Chr11:6354857..6354881 (25 bp)
GTCTCCAACACCGACGGGCAGGAGA
LOC_Os11g11440
OsAffx.18800.1.S1_s_at--868--1971Chr11:6354567..6354591 (25 bp)
ACATGGCAAGGTGGCCCAAGACCGA
LOC_Os11g11440
Target Sequence 
ATAGATGTGTCCCTCACCTTGGAGTCTCTGATGGTCTCCGGTGATCTGTACTTCGTCGTTGGTAAGGATGGAGAAAAAGT
TCCGGTGGCGTGGCTCGTCGGCAGGACTGGCCTGCTCTACTTCTCAGCTCACTGGTGCAGTCCATGCCGGAAATTCCTCC
CTAAGCTCATCGAGGAGTACATCAAGATGAGGGAGGAGACAAGCAGTGACGTTGAGGTCGTCTTCGTCTCCAACACCGAC
GGGCAGGAGAAAAGGAATTGTCATCTCACATGGCAAGGTGGCCCAAGACCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18800.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis