Browse Element(s) Details


OsAffx.18821.1.S1_at

Description tigr:9639.m01203
TID=OsAffx.18821.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1256011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12550OsAffx.8939.1.S1_x_at4/1111+7041422..7041876hypothetical protein
LOC_Os11g12550OsAffx.8939.1.S1_at2/1111+7041422..7041876hypothetical protein
LOC_Os11g12560OsAffx.18821.1.S1_at11/1111+7051975..7056871Leucine Rich Repeat family protein
LOC_Os11g12570OsAffx.18822.1.S1_at11/1111+7060805..7061872hypothetical protein
LOC_Os11g12580OsAffx.7098.1.S1_at10/1111+7062356..7064567hypothetical protein
LOC_Os11g12590OsAffx.30942.1.S1_at11/1111+7067884..7071059hypothetical protein
LOC_Os11g12600OsAffx.30943.1.S1_at11/1111+7074034..7074480hypothetical protein
LOC_Os11g12610NANA11+7079778..7080250hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009934biological_processregulation of meristem organization
GO:0030154biological_processcell differentiation
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18821.1.S1_at--189--5511Chr11:7052551..7052575 (25 bp)
GAACAATCTATCTGGGCCGATCCCG
LOC_Os11g12560
OsAffx.18821.1.S1_at--600--7631Chr11:7052516..7052540 (25 bp)
GGGAGCTACGGTTCCTGAAGAGATT
LOC_Os11g12560
OsAffx.18821.1.S1_at--571--9931Chr11:7052427..7052451 (25 bp)
TACGGCATCGATATCTCCGAGAATG
LOC_Os11g12560
OsAffx.18821.1.S1_at--917--5951Chr11:7052409..7052433 (25 bp)
GAGAATGCATTCTCTGGCCCATTCC
LOC_Os11g12560
OsAffx.18821.1.S1_at--110--4231Chr11:7052385..7052409 (25 bp)
CCGAGGTATCTGTGCCACGGCAAGA
LOC_Os11g12560
OsAffx.18821.1.S1_at--594--5891Chr11:7052319..7052343 (25 bp)
GAGCTCCCGGAGGAATACTCGGCCT
LOC_Os11g12560
OsAffx.18821.1.S1_at--383--7731Chr11:7052284..7052308 (25 bp)
GGTGATCTTCCGAGTTCACGGTAAC
LOC_Os11g12560
OsAffx.18821.1.S1_at--703--6751Chr11:7052128..7052152 (25 bp)
GTTACACAATAACCGGCTCGACGGC
LOC_Os11g12560
OsAffx.18821.1.S1_at--401--4811Chr11:7052080..7052104 (25 bp)
GCTCTGGCGGCTCAAGAAGCTATAC
LOC_Os11g12560
OsAffx.18821.1.S1_at--520--5391Chr11:7052065..7052089 (25 bp)
GAAGCTATACCTTTCGAATAACTCG
LOC_Os11g12560
OsAffx.18821.1.S1_at--710--1231Chr11:7052018..7052042 (25 bp)
AGATCGGTAACCTAAGCAAGCTGAC
LOC_Os11g12560
Target Sequence 
GAACAATCTATCTGGGCCGATCCCGGCAGCGTGGGGGGAGCTACGGTTCCTGAAGAGATTTGCTGTCTATGAGAACAATT
TCTCCGGCGAGTTCCCGGCGAACTTCGGCCGCTTCTCGCCGCTTTACGGCATCGATATCTCCGAGAATGCATTCTCTGGC
CCATTCCCGAGGTATCTGTGCCACGGCAAGAACCTCCAGTACCTTCTCACCATCGGGAACAGCTTCTCCGGCGAGCTCCC
GGAGGAATACTCGGCCTGCCACCATTTGGTGATCTTCCGAGTTCACGGTAACACGCTCACCGGCAACCTCCCGGCGTGGG
TGTGGGGACAACAATCTGCGGAGATCATTGATGTTTCGAACAATGGGTTCACCGGAAGAATCTCGCCGGCGATCAGCAAG
GCGCAGAGGCTGAAGGAGCTCTGGTTACACAATAACCGGCTCGACGGCGAGATCCCCAGGGAGATCGGCCGGCTCTGGCG
GCTCAAGAAGCTATACCTTTCGAATAACTCGTTCTCCGGCGTGATACCACCGGAGATCGGTAACCTAAGCAAGCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis