Browse Element(s) Details


OsAffx.1887.1.S1_x_at

Description gb:AK066440.1
DB_XREF= gi:32976458
TID=OsAffx.1887.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013066A01, full insert sequence.
FL= gb:AK066440.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3947011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39434NANA10+20709917..20711620hypothetical protein
LOC_Os10g39440Os.28087.1.S1_s_at11/1110+20718616..20722967hexose transporter, putative, expressed
LOC_Os10g39440Os.49153.1.A1_x_at11/1110+20718616..20722967hexose transporter, putative, expressed
LOC_Os10g39440Os.28087.1.S1_at9/1110+20718616..20722967hexose transporter, putative, expressed
LOC_Os10g39450Os.51573.1.S1_x_at2/1110+20725755..20726522Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39460Os.46866.1.S1_at11/1110+20728433..20731616PPR986-12, putative, expressed
LOC_Os10g39470OsAffx.1887.1.S1_x_at11/1110+20736620..20745261expressed protein
LOC_Os10g39470Os.7121.1.S1_at11/1110+20736620..20745261expressed protein
LOC_Os10g39480OsAffx.828.1.S1_x_at2/1110+20752790..20753419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g39489NANA10+20756619..20757626expressed protein
LOC_Os10g39500Os.46512.1.S1_at11/1110+20762293..20766904expressed protein
LOC_Os10g39500Os.46512.2.S1_x_at6/1110+20762293..20766904expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1887.1.S1_x_at--251--10771Chr10:20744385..20744409 (25 bp)
TTGAGGCATTCAGTACACACAGTGG
LOC_Os10g39470
OsAffx.1887.1.S1_x_at--51--6611Chr10:20744574..20744598 (25 bp)
GATTGTGCCAAGTCTTATCATCATT
LOC_Os10g39470
OsAffx.1887.1.S1_x_at--403--5332Chr10:20744612..20744636 (25 bp)
GAAGTCGAAGTGTCCTGATTCTCAT
LOC_Os10g39470
OsAffx.1887.1.S1_x_at--6--1071Chr10:20744641..20744665 (25 bp)
AGGGTTCTTGTCTCTTTTTTGCTGA
LOC_Os10g39470
OsAffx.1887.1.S1_x_at--678--5531Chr10:20744687..20744711 (25 bp)
GAAACACTATTTTTGCTGTCCCCTA
LOC_Os10g39470
OsAffx.1887.1.S1_x_at--416--5751Chr10:20744824..20744845 (22 bp)
GACGGTCATTGTCACGGATGCCAAA
LOC_Os10g39470
OsAffx.1887.1.S1_x_at--818--9551Chr10:20744859..20744883 (25 bp)
TCTTAAGCATCCTTCAGACGGTGGC
LOC_Os10g39470
OsAffx.1887.1.S1_x_at--593--8011Chr10:20744889..20744913 (25 bp)
GGAGGGCAACGCTGACTCTGGATTC
LOC_Os10g39470
OsAffx.1887.1.S1_x_at--699--7011Chr10:20744958..20744982 (25 bp)
GTACTAAATTGAGCAGCGCCTGAAT
LOC_Os10g39470
OsAffx.1887.1.S1_x_at--278--5271Chr10:20744996..20745020 (25 bp)
GAATGCTCCTACATAAACCTTGTGT
LOC_Os10g39470
OsAffx.1887.1.S1_x_at--568--2631Chr10:20745011..20745035 (25 bp)
AACCTTGTGTTCATGTTCAAACTGG
LOC_Os10g39470
Target Sequence 
TTGAGGCATTCAGTACACACAGTGGGGCTAATGTGGTTGAATATGAGCTTGAAGATATTTCTCACCAGTGTTTGATTTTT
GATGATTGTGCCAAGTCTTATCATCATTACAATTTCATAATGAAGTCGAAGTGTCCTGATTCTCATTTGGAGGGTTCTTG
TCTCTTTTTTGCTGAAGTTAAAGTTGTGGATGGAGAGAAACACTATTTTTGCTGTCCCCTACAACCTGATGACGACGGTC
ATTGTCACGGATGCCAAAACTCTGGAATTGATCTTAAGCATCCTTCAGACGGTGGCTACGAGGAGGGCAACGCTGACTCT
GGATTCCCTTTTGATCCAATTTAATTTGATGGATGAAAATTCAGAAATATGTACTAAATTGAGCAGCGCCTGAATTGAGT
TGTGTGATGAATGCTCCTACATAAACCTTGTGTTCATGTTCAAACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1887.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis