Browse Element(s) Details


OsAffx.18883.1.S1_at

Description tigr:9639.m01518
TID=OsAffx.18883.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=atp-dependent clp protease atp-binding subunit clpa homolog cd4b, chloroplast precursor. (tomato
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1677011/11ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16730OsAffx.30486.1.S1_at1/1111+9244543..9250084transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16740NANA11+9252986..9253294transposon protein, putative, unclassified
LOC_Os11g16750NANA11+9254052..9256399transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16760OsAffx.7125.1.S1_at11/1111+9258535..9259433hypothetical protein
LOC_Os11g16770OsAffx.18883.1.S1_at11/1111+9274678..9279976ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
LOC_Os11g16780OsAffx.18882.1.S1_at11/1111+9280427..9283006hypothetical protein
LOC_Os11g16790Os.14491.2.S1_x_at4/1111+9290329..9296048transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16790Os.47463.1.S1_x_at3/1111+9290329..9296048transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0009408biological_processresponse to heat
GO:0009658biological_processchloroplast organization and biogenesis
GO:0045037biological_processprotein import into chloroplast stroma
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18883.1.S1_at--914--8111Chr11:9275134..9275158 (25 bp)
GGACTTCAAGAACACGCTCATCGTC
LOC_Os11g16770
OsAffx.18883.1.S1_at--626--2751Chr11:9275127..9275151 (25 bp)
AAGAACACGCTCATCGTCATGACGA
LOC_Os11g16770
OsAffx.18883.1.S1_at--554--2171Chr11:9275123..9275147 (25 bp)
ACACGCTCATCGTCATGACGACCAA
LOC_Os11g16770
OsAffx.18883.1.S1_at--704--5051Chr11:9275093..9275117 (25 bp)
GCAGCAGCCTCATCGTCAACAACGG
LOC_Os11g16770
OsAffx.18883.1.S1_at--761--4211Chr11:9275051..9275075 (25 bp)
CCGCCGGGAGGATCAAGAACACGGT
LOC_Os11g16770
OsAffx.18883.1.S1_at--957--3211Chr11:9275038..9275062 (25 bp)
CAAGAACACGGTGACCGACGAGATG
LOC_Os11g16770
OsAffx.18883.1.S1_at--464--1251Chr11:9275018..9275042 (25 bp)
AGATGAAGCGCCACTTCCGGCCCGA
LOC_Os11g16770
OsAffx.18883.1.S1_at--942--5771Chr11:9274977..9275001 (25 bp)
GACGAGGTGATCATGTTCCAGCCAC
LOC_Os11g16770
OsAffx.18883.1.S1_at--572--8831Chr11:9274970..9274994 (25 bp)
TGATCATGTTCCAGCCACTGACCGA
LOC_Os11g16770
OsAffx.18883.1.S1_at--323--3331Chr11:9274955..9274979 (25 bp)
CACTGACCGAGCTCGAGGTCGGGAA
LOC_Os11g16770
OsAffx.18883.1.S1_at--52--8011Chr11:9274837..9274861 (25 bp)
GGAGGAGGGATTCGACCCGAGCTAC
LOC_Os11g16770
Target Sequence 
GGACTTCAAGAACACGCTCATCGTCATGACGACCAACATCGGCAGCAGCCTCATCGTCAACAACGGCGGCGACGGCGCCG
CCGCCGCCGGGAGGATCAAGAACACGGTGACCGACGAGATGAAGCGCCACTTCCGGCCCGAGTTCCTGAACCGGCTGGAC
GAGGTGATCATGTTCCAGCCACTGACCGAGCTCGAGGTCGGGAAGATCGCCGGGATCATGCTGGAGGAGTTCGCCGGGAG
GGTCAGGGAGAAGGGGATCAAGCTGAAGGTGACGGACAAGTTCAGGGAGCTCGTCGTGGAGGAGGGATTCGACCCGAGCT
AC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18883.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis