Browse Element(s) Details


OsAffx.18996.1.S1_at

Description tigr:9639.m02193
TID=OsAffx.18996.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2477010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24720OsAffx.31117.1.S1_at11/1111+13584452..13586251ankyrin repeat family protein, putative
LOC_Os11g24730OsAffx.18995.1.S1_at11/1111+13591347..13592150protein kinase, putative
LOC_Os11g24740OsAffx.31118.1.S1_at11/1111+13596239..13596660hypothetical protein
LOC_Os11g24750OsAffx.31119.1.S1_at11/1111+13597207..13598520hypothetical protein
LOC_Os11g24760NANA11+13602464..13605469retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24770OsAffx.18996.1.S1_at10/1111+13609305..13611667hypothetical protein
LOC_Os11g24780OsAffx.7192.1.S1_at11/1111+13617725..13621452expressed protein
LOC_Os11g24790Os.56299.1.S1_at11/1111+13630191..13631990retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g24800Os.29825.2.S1_at11/1111+13634000..13636629expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18996.1.S1_at--636--4951NONE
GCATTTTATATCTGCACGGGCCAGC
NONE
OsAffx.18996.1.S1_at--412--1931Chr11:13609955..13609979 (25 bp)
ACAGGAGGAGCACACCGGCCTACCG
LOC_Os11g24770
OsAffx.18996.1.S1_at--887--8191Chr11:13609921..13609945 (25 bp)
GGAAGAGAGTATCCCCAGCCGCTTG
LOC_Os11g24770
OsAffx.18996.1.S1_at--842--9951Chr11:13609862..13609886 (25 bp)
TACCCTTCCGCTTGTCGTCATCGTG
LOC_Os11g24770
OsAffx.18996.1.S1_at--923--7631Chr11:13609836..13609860 (25 bp)
GGGACCACAGCCAACGATGCCATGG
LOC_Os11g24770
OsAffx.18996.1.S1_at--723--6411Chr11:13609795..13609819 (25 bp)
GATCTGCTCTCTCCGCACAGGAACA
LOC_Os11g24770
OsAffx.18996.1.S1_at--999--931Chr11:13609777..13609801 (25 bp)
AGGAACACGGCTACATCCCTATTTG
LOC_Os11g24770
OsAffx.18996.1.S1_at--100--4851Chr11:13609768..13609792 (25 bp)
GCTACATCCCTATTTGTTCACATCG
LOC_Os11g24770
OsAffx.18996.1.S1_at--779--211Chr11:13609757..13609781 (25 bp)
ATTTGTTCACATCGCCAATCTTGGC
LOC_Os11g24770
OsAffx.18996.1.S1_at--215--3071Chr11:13609741..13609765 (25 bp)
AATCTTGGCCAGTGTCAGCGGCTTG
LOC_Os11g24770
OsAffx.18996.1.S1_at--258--1071Chr11:13609430..13609454 (25 bp)
AGGGAGATCACGGTTGCCGTCGTTA
LOC_Os11g24770
Target Sequence 
GCATTTTATATCTGCACGGGCCAGCGACAGGAGGAGCACACCGGCCTACCGGAGAGGAGGGGAAGAGAGTATCCCCAGCC
GCTTGAGGAGCCTCCTGCGCTCGGCCTCCTCCCAAGCCCTACCCTTCCGCTTGTCGTCATCGTGGGGGACCACAGCCAAC
GATGCCATGGGGCGGCCATCCCCATCGATCTGCTCTCTCCGCACAGGAACACGGCTACATCCCTATTTGTTCACATCGCC
AATCTTGGCCAGTGTCAGCGGCTTGGGATGAAGAGGATGCCGTTGCCCACGGCCTCCTCGGTGGCCACCATGCCCCGCGC
CTCGAACGAGTGCCGCTGCCACTTGAGTACATCTGAGGTGGGGGCCATCGGATTTGATGAAGCGACGGCGACGGTGGCCT
CCTCAACCATCGGCACGGTCTCGTCGACAGCGATGGGAGAGAGAAGGGAGATCACGGTTGCCGTCGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis