Browse Element(s) Details


OsAffx.7192.1.S1_at

Description tigr:9639.m02194
TID=OsAffx.7192.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2478011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24740OsAffx.31118.1.S1_at11/1111+13596239..13596660hypothetical protein
LOC_Os11g24750OsAffx.31119.1.S1_at11/1111+13597207..13598520hypothetical protein
LOC_Os11g24760NANA11+13602464..13605469retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24770OsAffx.18996.1.S1_at10/1111+13609305..13611667hypothetical protein
LOC_Os11g24780OsAffx.7192.1.S1_at11/1111+13617725..13621452expressed protein
LOC_Os11g24790Os.56299.1.S1_at11/1111+13630191..13631990retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g24800Os.29825.2.S1_at11/1111+13634000..13636629expressed protein
LOC_Os11g24810Os.14919.1.S1_at3/1111+13638084..13643523Transposable element protein, putative, MuDR
LOC_Os11g24810OsAffx.29313.1.S1_at1/1111+13638084..13643523Transposable element protein, putative, MuDR
LOC_Os11g24810Os.56216.1.S1_at1/1111+13638084..13643523Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7192.1.S1_at--454--2451Chr11:13618278..13618302 (25 bp)
AAAATCTTGCAGTTGTTTCCACGCT
LOC_Os11g24780
OsAffx.7192.1.S1_at--263--3011Chr11:13618187..13618211 (25 bp)
AATCCTAACCGGTGATCGCATGTAT
LOC_Os11g24780
OsAffx.7192.1.S1_at--341--10131Chr11:13618165..13618189 (25 bp)
TATGATGCCTTCTTGGTTCTGGATA
LOC_Os11g24780
OsAffx.7192.1.S1_at--815--1931Chr11:13618117..13618141 (25 bp)
ACGGCAACAATACTTCTGGTCTATG
LOC_Os11g24780
OsAffx.7192.1.S1_at--533--6931Chr11:13618063..13618087 (25 bp)
GTAGGCTTCATGATCTCGATGCACT
LOC_Os11g24780
OsAffx.7192.1.S1_at--200--6331Chr11:13618046..13618070 (25 bp)
GATGCACTTCCTATGGATGTCACTT
LOC_Os11g24780
OsAffx.7192.1.S1_at--853--811Chr11:13618015..13618039 (25 bp)
ATGGTGCTAGGCTTCTTCACTGCTA
LOC_Os11g24780
OsAffx.7192.1.S1_at--806--6411Chr11:13617938..13617962 (25 bp)
GATCTACTTCGGGATGTACTTCTTG
LOC_Os11g24780
OsAffx.7192.1.S1_at--366--2471Chr11:13617890..13617914 (25 bp)
AACACCAGGGTCACTTATAGGCACT
LOC_Os11g24780
OsAffx.7192.1.S1_at--143--9731Chr11:13617822..13617846 (25 bp)
TCAAGAGACGCATCTGCCGGCAGTA
LOC_Os11g24780
OsAffx.7192.1.S1_at--923--1191Chr11:13617801..13617825 (25 bp)
AGTATCCCTTCACCATTAGCTATGT
LOC_Os11g24780
Target Sequence 
AAAATCTTGCAGTTGTTTCCACGCTTGTGGCAACAGTCGCCTTCTCCGCAGCTTTCAACGTTCCTGGATCATATGGAGAT
GATGGAAAAGCAATCCTAACCGGTGATCGCATGTATGATGCCTTCTTGGTTCTGGATACATTTGCTGTGGTTAGTTCAGT
GACGGCAACAATACTTCTGGTCTATGGAAGAGCCTCCCAGTCTAACCGTTCATGGGTAGGCTTCATGATCTCGATGCACT
TCCTATGGATGTCACTTAACAGCATGGTGCTAGGCTTCTTCACTGCTATGGCTGCAGTGACGAACAAGAAAGTGGGCACG
AAGACAGCAATGTCCCAAATGATCTACTTCGGGATGTACTTCTTGGTAATGCTACTCATAAGCCTTGTAACACCAGGGTC
ACTTATAGGCACTTTGAAGTTTCTGATAGGGGGTTGCATGGAACGACAACGGCGTGTCAAGAGACGCATCTGCCGGCAGT
ATCCCTTCACCATTAGCTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis