Browse Element(s) Details


OsAffx.19000.1.S1_at

Description tigr:9639.m02221
TID=OsAffx.19000.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2504011/11uncharacterized plant-specific domain TIGR01615 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25010NANA11+13743306..13746636transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25020OsAffx.7196.1.S1_at11/1111+13748025..13749196uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os11g25030OsAffx.31123.1.S1_x_at11/1111+13750043..13750402hypothetical protein
LOC_Os11g25040OsAffx.19000.1.S1_at11/1111+13767493..13768707uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os11g25050NANA11+13769782..13775137retrotransposon protein, putative, unclassified, expressed
LOC_Os11g25060OsAffx.19001.1.S1_at10/1111+13784878..13790594oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os11g25070Os.40360.1.S1_x_at1/1111+13791352..13795078retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25070Os.17546.2.S1_x_at1/1111+13791352..13795078retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19000.1.S1_at--586--4231Chr11:13767851..13767875 (25 bp)
CCGACGTGGTGGATTCCATGCGTGA
LOC_Os11g25040
OsAffx.19000.1.S1_at--245--4331Chr11:13767866..13767890 (25 bp)
CCATGCGTGAGCTGGAGAACGTCCG
LOC_Os11g25040
OsAffx.19000.1.S1_at--1034--1851Chr11:13767947..13767971 (25 bp)
ACGACGCTGGCCTCTGCAAGGCGCG
LOC_Os11g25040
OsAffx.19000.1.S1_at--66--4151Chr11:13767968..13767992 (25 bp)
CGCGGTGGAACAAGACGAGCAGCAT
LOC_Os11g25040
OsAffx.19000.1.S1_at--181--5011Chr11:13767989..13768013 (25 bp)
GCATGGTCGCCGGAAGCTACGAGTA
LOC_Os11g25040
OsAffx.19000.1.S1_at--267--1871Chr11:13768007..13768031 (25 bp)
ACGAGTACATCGATGTCGTCGTCGC
LOC_Os11g25040
OsAffx.19000.1.S1_at--946--8371Chr11:13768053..13768077 (25 bp)
GGCGACGAGATACATCGTCGACGTC
LOC_Os11g25040
OsAffx.19000.1.S1_at--687--8191Chr11:13768113..13768137 (25 bp)
GGAAGACTACGAGGCCGTGCGCTCC
LOC_Os11g25040
OsAffx.19000.1.S1_at--754--2671Chr11:13768255..13768279 (25 bp)
AAGCGCAAGTTCATGATTGCCAAAT
LOC_Os11g25040
OsAffx.19000.1.S1_at--421--1591Chr11:13768348..13768372 (25 bp)
AGCTCGTTGGCTGTCTGCCGGACAG
LOC_Os11g25040
OsAffx.19000.1.S1_at--1041--3871Chr11:13768358..13768382 (25 bp)
CTGTCTGCCGGACAGTCCATGGTTT
LOC_Os11g25040
Target Sequence 
CCGACGTGGTGGATTCCATGCGTGAGCTGGAGAACGTCCGCGCCCAACGGTCGGCGTTCCGGCGCGCGGTGATGTCCCTC
CTGCGGGAGCGCGGCCACGACGCTGGCCTCTGCAAGGCGCGGTGGAACAAGACGAGCAGCATGGTCGCCGGAAGCTACGA
GTACATCGATGTCGTCGTCGCCGCCGCACCAGATGCTGCAGAGGCGACGAGATACATCGTCGACGTCGGCTTCGCCGGTG
AGTTCGAGGTGGCGCGGCCGACGGAAGACTACGAGGCCGTGCGCTCCGCGCTGCCGGAGGTGCTCGTCGCGAGGCCCGAC
GACGTGAGGAAGGTCGTCAGGGCGGCGGCGTCGGCGGCGCGGCGTTCGCTGAAGCGCCGCCGCCTCAGCGTGCCGCCGTG
GAGGAAGCGCAAGTTCATGATTGCCAAATGGCTTGGCCCGTACAGGAGGACGGTGAACGCCGTGCCGACGTCTGCCGGCA
CGGCGATCGACGGCGGCAGCTCGTTGGCTGTCTGCCGGACAGTCCATGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis