Browse Element(s) Details


OsAffx.7196.1.S1_at

Description tigr:9639.m02219
TID=OsAffx.7196.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2502011/11uncharacterized plant-specific domain TIGR01615 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24980OsAffx.7195.1.S1_at11/1111+13723734..13724102hypothetical protein
LOC_Os11g24990NANA11+13728193..13735331retrotransposon protein, putative, unclassified
LOC_Os11g25000Os.47463.1.S1_x_at6/1111+13736537..13740235transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25000Os.14491.2.S1_x_at4/1111+13736537..13740235transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25010NANA11+13743306..13746636transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25020OsAffx.7196.1.S1_at11/1111+13748025..13749196uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os11g25030OsAffx.31123.1.S1_x_at11/1111+13750043..13750402hypothetical protein
LOC_Os11g25040OsAffx.19000.1.S1_at11/1111+13767493..13768707uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os11g25050NANA11+13769782..13775137retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7196.1.S1_at--953--2291Chr11:13748296..13748320 (25 bp)
AAATGGCCGCGCTCCGAGGAGCCCG
LOC_Os11g25020
OsAffx.7196.1.S1_at--20--8371Chr11:13748336..13748360 (25 bp)
GGCGGTGGCGTCTCGCCTCAGCGAG
LOC_Os11g25020
OsAffx.7196.1.S1_at--1096--4511Chr11:13748415..13748439 (25 bp)
GCCGCGGGGAACTACGAGTACATCG
LOC_Os11g25020
OsAffx.7196.1.S1_at--473--1171Chr11:13748431..13748455 (25 bp)
AGTACATCGACGTGGTGGTGACCGC
LOC_Os11g25020
OsAffx.7196.1.S1_at--47--4151Chr11:13748501..13748525 (25 bp)
CGCGGAGCGGCGGTACATCGTCGAC
LOC_Os11g25020
OsAffx.7196.1.S1_at--466--8471Chr11:13748551..13748575 (25 bp)
TGGCGCGTCCGACGGTGGGCTACGA
LOC_Os11g25020
OsAffx.7196.1.S1_at--656--4091Chr11:13748560..13748584 (25 bp)
CGACGGTGGGCTACGACGAGCTGGT
LOC_Os11g25020
OsAffx.7196.1.S1_at--1064--4131Chr11:13748662..13748686 (25 bp)
CGCGGCGGTCGATCAAGAGCCAGGG
LOC_Os11g25020
OsAffx.7196.1.S1_at--1159--7671Chr11:13748823..13748847 (25 bp)
GGGTTCATGCTTGGACCACCTATAC
LOC_Os11g25020
OsAffx.7196.1.S1_at--237--6751Chr11:13748825..13748849 (25 bp)
GTTCATGCTTGGACCACCTATACAG
LOC_Os11g25020
OsAffx.7196.1.S1_at--650--4931Chr11:13748831..13748855 (25 bp)
GCTTGGACCACCTATACAGCCATGG
LOC_Os11g25020
Target Sequence 
AAATGGCCGCGCTCCGAGGAGCCCGGCCGGCGTTCCGACGGGCGGTGGCGTCTCGCCTCAGCGAGGCCGGCTACGACGCC
GCCGTGTGCCGGACGAGGTGGCGCGCGGCGCGCGACGTGGCCGCGGGGAACTACGAGTACATCGACGTGGTGGTGACCGC
GGTCACCGCCGCCGGCGCCGGCGCAGCGAAATCCGCCGCGCACGGCGCGGAGCGGCGGTACATCGTCGACGTCGGGTTCG
CGGCGGAGTTCGCCGTGGCGCGTCCGACGGTGGGCTACGACGAGCTGGTGCTGTCCGCCCTCCCGGCCATCCTGGTCGCT
CCGCCGACGGTGGCGCGGGAGGCGGTGACGCTGGCGGCCAAGGCGGCGCGGCGGTCGATCAAGAGCCAGGGGCTCGCCGT
GCCGCCGTGGCGGAAGAAGCGGTTCGTGGCGGCCAAGTGGCTCGGCCCGTACCGCCGGACGCCGCCTCACGACGCGGCCA
CCGCCGGTGCAGCTGGAGGCGCCGGAGAAGCGGCGTGCCGCACGGTGGGGTTCATGCTTGGACCACCTATACAGCCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis