Browse Element(s) Details


OsAffx.7195.1.S1_at

Description tigr:9639.m02215
TID=OsAffx.7195.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2498011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24930NANA11+13694274..13700236retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24940OsAffx.31122.1.S1_at11/1111+13702752..13703786hypothetical protein
LOC_Os11g24950NANA11+13708738..13711829retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24964Os.47463.1.S1_x_at4/1111+13713577..13718941transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24964Os.14491.2.S1_x_at3/1111+13713577..13718941transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24980OsAffx.7195.1.S1_at11/1111+13723734..13724102hypothetical protein
LOC_Os11g24990NANA11+13728193..13735331retrotransposon protein, putative, unclassified
LOC_Os11g25000Os.47463.1.S1_x_at6/1111+13736537..13740235transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25000Os.14491.2.S1_x_at4/1111+13736537..13740235transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25010NANA11+13743306..13746636transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25020OsAffx.7196.1.S1_at11/1111+13748025..13749196uncharacterized plant-specific domain TIGR01615 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7195.1.S1_at--785--5831Chr11:13724030..13724054 (25 bp)
GACCTCACTGTGACCATGGTGGATA
LOC_Os11g24980
OsAffx.7195.1.S1_at--550--6491Chr11:13724009..13724033 (25 bp)
GATAGGTGCGCCTCCAATGCTATAG
LOC_Os11g24980
OsAffx.7195.1.S1_at--962--3011Chr11:13723994..13724018 (25 bp)
AATGCTATAGCCCTCCTGGAGTTGG
LOC_Os11g24980
OsAffx.7195.1.S1_at--550--3631Chr11:13723942..13723966 (25 bp)
CTTGCATTGGCACCTCAAACTATTC
LOC_Os11g24980
OsAffx.7195.1.S1_at--374--2531Chr11:13723925..13723949 (25 bp)
AACTATTCCGTGGTGACGCCAACAA
LOC_Os11g24980
OsAffx.7195.1.S1_at--643--3211Chr11:13723903..13723927 (25 bp)
CAAGGTGTTCGACAGTTGTCATCAA
LOC_Os11g24980
OsAffx.7195.1.S1_at--156--2511Chr11:13723880..13723904 (25 bp)
AACATCAGTGACATCGCTATTCAGG
LOC_Os11g24980
OsAffx.7195.1.S1_at--659--531Chr11:13723868..13723892 (25 bp)
ATCGCTATTCAGGTCTTGGTTGCAC
LOC_Os11g24980
OsAffx.7195.1.S1_at--333--7911Chr11:13723851..13723875 (25 bp)
GGTTGCACCTCTAATCATAGCAGTT
LOC_Os11g24980
OsAffx.7195.1.S1_at--956--9691Chr11:13723793..13723817 (25 bp)
TCACAAGTCATGGTGTTGCAGCCGA
LOC_Os11g24980
OsAffx.7195.1.S1_at--1153--10731Chr11:13723778..13723802 (25 bp)
TTGCAGCCGAATGTTGTGCTCATCT
LOC_Os11g24980
Target Sequence 
GACCTCACTGTGACCATGGTGGATAGGTGCGCCTCCAATGCTATAGCCCTCCTGGAGTTGGTAGATGGCGAGGACAAGGA
CCCGGCTCCTTGCATTGGCACCTCAAACTATTCCGTGGTGACGCCAACAAGGTGTTCGACAGTTGTCATCAACATCAGTG
ACATCGCTATTCAGGTCTTGGTTGCACCTCTAATCATAGCAGTTTCTTGGGAGATGATCATAGGGCTCATAGAGCCATCA
CAAGTCATGGTGTTGCAGCCGAATGTTGTGCTCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis