Browse Element(s) Details


OsAffx.31122.1.S1_at

Description tigr:9639.m02211
TID=OsAffx.31122.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2494011/11hypothetical protein
LOC_Os11g249101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24870NANA11+13675842..13679496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24880Os.47463.1.S1_x_at6/1111+13679681..13680675transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24880Os.14491.2.S1_x_at4/1111+13679681..13680675transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24890OsAffx.7193.1.S1_at9/1111+13683837..13685772expressed protein
LOC_Os11g24900OsAffx.18999.1.S1_at11/1111+13686901..13687202hypothetical protein
LOC_Os11g24910OsAffx.31122.1.S1_at1/1111+13688834..13689448hypothetical protein
LOC_Os11g24920OsAffx.1412.1.S1_at1/1111+13690877..13693803retrotransposon protein, putative, unclassified
LOC_Os11g24930NANA11+13694274..13700236retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24940OsAffx.31122.1.S1_at11/1111+13702752..13703786hypothetical protein
LOC_Os11g24950NANA11+13708738..13711829retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24964Os.47463.1.S1_x_at4/1111+13713577..13718941transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24964Os.14491.2.S1_x_at3/1111+13713577..13718941transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24980OsAffx.7195.1.S1_at11/1111+13723734..13724102hypothetical protein
LOC_Os11g24990NANA11+13728193..13735331retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31122.1.S1_at--254--9712Chr11:13703257..13703281 (25 bp)
TCAACAGCTTCTTCACCGAGATCAG
LOC_Os11g24940
OsAffx.31122.1.S1_at--1067--5331Chr11:13703362..13703386 (25 bp)
GAAGAGGAGCCTTCCACGTTTTCTT
LOC_Os11g24940
OsAffx.31122.1.S1_at--489--1891Chr11:13703377..13703401 (25 bp)
ACGTTTTCTTGCTGGAATCCGACGG
LOC_Os11g24940
OsAffx.31122.1.S1_at--303--5911Chr11:13703403..13703427 (25 bp)
GAGCTCTACATGGTCCGCCTGAAGA
LOC_Os11g24940
OsAffx.31122.1.S1_at--240--4471Chr11:13703419..13703443 (25 bp)
GCCTGAAGACAACCTTGGGATCCCA
LOC_Os11g24940
OsAffx.31122.1.S1_at--490--4171Chr11:13703482..13703506 (25 bp)
CGCCATTGCAGGTGGGTGTCTACAA
LOC_Os11g24940
OsAffx.31122.1.S1_at--183--6971Chr11:13703568..13703592 (25 bp)
GTAGCTCCTTTCTATTTTGGCGCGT
LOC_Os11g24940
OsAffx.31122.1.S1_at--526--1452Chr11:13703623..13703647 (25 bp)
AGAAGAACTGCGTCTACTCTGTTCG
LOC_Os11g24940
OsAffx.31122.1.S1_at--637--1992Chr11:13703638..13703662 (25 bp)
ACTCTGTTCGCTACTTGGGTGACAA
LOC_Os11g24940
OsAffx.31122.1.S1_at--888--5611Chr11:13703658..13703682 (25 bp)
GACAAATCTTTCACCGTTTCTAATG
LOC_Os11g24940
OsAffx.31122.1.S1_at--335--7311Chr11:13703719..13703743 (25 bp)
GTGCTGAAGCTTCTCCTGATAGTAT
LOC_Os11g24940
Target Sequence 
TCAACAGCTTCTTCACCGAGATCAGCGTNNTCGANNNNNGNNNNCNNNNNNNNNNNCCGCGGTTCAGCTCCATCAGACTG
GACGGCGGCGCACCGGGCGACTGGGGAAGAGGAGCCTTCCACGTTTTCTTGCTGGAATCCGACGGGGAGCTCTACATGGT
CCGCCTGAAGACAACCTTGGGATCCCAGTCGTCGCCTGCATCATCGTCGTCGTCGTCGTCGCCATCGCCATTGCAGGTGG
GTGTCTACAAGATGGATTTCTCCGAGCGGAGATGGTGCCGAGCTGTTGATCTCGGTGACCGCGCATTCTTCGTAGCTCCT
TTCTATTTTGGCGCGTCGTGCGTGGCCGGTGGCAAGTACGGGATTCAGAAGAACTGCGTCTACTCTGTTCGCTACTTGGG
TGACAAATCTTTCACCGTTTCTAATGTAGAGGATGGAACCTCACATGTGCATAGCATCCATGGTGCTGAAGCTTCTCCTG
ATAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis