Browse Element(s) Details


OsAffx.7193.1.S1_at

Description tigr:9639.m02206
TID=OsAffx.7193.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g248909/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24830NANA11+13655377..13659705retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g24840OsAffx.18998.1.S1_at11/1111+13663959..13665285hypothetical protein
LOC_Os11g24850OsAffx.31121.1.S1_at10/1111+13668827..13669663ankyrin repeat family protein, putative
LOC_Os11g24860NANA11+13671111..13674416transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24870NANA11+13675842..13679496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24880Os.47463.1.S1_x_at6/1111+13679681..13680675transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24880Os.14491.2.S1_x_at4/1111+13679681..13680675transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24890OsAffx.7193.1.S1_at9/1111+13683837..13685772expressed protein
LOC_Os11g24900OsAffx.18999.1.S1_at11/1111+13686901..13687202hypothetical protein
LOC_Os11g24910OsAffx.31122.1.S1_at1/1111+13688834..13689448hypothetical protein
LOC_Os11g24920OsAffx.1412.1.S1_at1/1111+13690877..13693803retrotransposon protein, putative, unclassified
LOC_Os11g24930NANA11+13694274..13700236retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24940OsAffx.31122.1.S1_at11/1111+13702752..13703786hypothetical protein
LOC_Os11g24950NANA11+13708738..13711829retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7193.1.S1_at--539--1131Chr11:13685693..13685717 (25 bp)
AGTGCCATGGCTACCAGCAGGCGAC
LOC_Os11g24890
OsAffx.7193.1.S1_at--633--851Chr11:13685687..13685711 (25 bp)
ATGGCTACCAGCAGGCGACGGCTAG
LOC_Os11g24890
OsAffx.7193.1.S1_at--928--10271Chr11:13685478..13685502 (25 bp)
TTTCGATCTGATGCGGTTTCTGTGT
LOC_Os11g24890
OsAffx.7193.1.S1_at--288--7551NONE
GTGGCGGCGCAATGAGACGCATCTT
NONE
OsAffx.7193.1.S1_at--282--8911NONE
TGAGACGCATCTTTTAGTTTTCATC
NONE
OsAffx.7193.1.S1_at--217--10451Chr11:13684085..13684109 (25 bp)
TTAGTTTTCATCCTGTGTCACTGGC
LOC_Os11g24890
OsAffx.7193.1.S1_at--295--9231Chr11:13684050..13684074 (25 bp)
TCCAGATCAAGGGAGCAGCAACAGA
LOC_Os11g24890
OsAffx.7193.1.S1_at--590--2391Chr11:13684031..13684055 (25 bp)
AACAGAAAAAGCTGCCTTGCCGCCG
LOC_Os11g24890
OsAffx.7193.1.S1_at--992--3511Chr11:13683978..13684002 (25 bp)
CATGTTGAGGATGGGTAGCACCTGC
LOC_Os11g24890
OsAffx.7193.1.S1_at--924--7591Chr11:13683919..13683943 (25 bp)
GGGCACTCGAGGAAAACACCATGGT
LOC_Os11g24890
OsAffx.7193.1.S1_at--931--7631Chr11:13683879..13683903 (25 bp)
GGGACCCGTGATGGTTATCGTCAAG
LOC_Os11g24890
Target Sequence 
AGTGCCATGGCTACCAGCAGGCGACGGCTAGGGGCGACGCCGACCAGCAGGCAATGGCTCGGGGCGCAGAGAAGCGGGCG
ACGGCTGGGGAGGCTGGGGGCAACGGTGCGACGGCTTGGAGGCGGGTGTGCAGCGCCGGCGGTGGACTGGATCAAGGTGG
CGAGGCAGCGACCGGCGTCGAGGCGCGGAGGCGGCGACTGGCGAGTGGCGATTTTTTTCGATCTGATGCGGTTTCTGTGT
GGCGGCGCAATGAGACGCATCTTTTAGTTTTCATCCTGTGTCACTGGCTCACTGCTCCTCCAGATCAAGGGAGCAGCAAC
AGAAAAAGCTGCCTTGCCGCCGCCAACATTGAAGAGAATGGCATAGATGCCATGTTGAGGATGGGTAGCACCTGCAGAAG
GCACAAACCTGCTGCCCCAAGGCTGGAGGGGGCACTCGAGGAAAACACCATGGTGGGCGGTTGCTATCGGGGACCCGTGA
TGGTTATCGTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis