Browse Element(s) Details


OsAffx.31121.1.S1_at

Description tigr:9639.m02202
TID=OsAffx.31121.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2485010/11ankyrin repeat family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24820NANA11+13653324..13654256expressed protein
LOC_Os11g24830NANA11+13655377..13659705retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g24840OsAffx.18998.1.S1_at11/1111+13663959..13665285hypothetical protein
LOC_Os11g24850OsAffx.31121.1.S1_at10/1111+13668827..13669663ankyrin repeat family protein, putative
LOC_Os11g24860NANA11+13671111..13674416transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24870NANA11+13675842..13679496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24880Os.47463.1.S1_x_at6/1111+13679681..13680675transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24880Os.14491.2.S1_x_at4/1111+13679681..13680675transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24890OsAffx.7193.1.S1_at9/1111+13683837..13685772expressed protein
LOC_Os11g24900OsAffx.18999.1.S1_at11/1111+13686901..13687202hypothetical protein
LOC_Os11g24910OsAffx.31122.1.S1_at1/1111+13688834..13689448hypothetical protein
LOC_Os11g24920OsAffx.1412.1.S1_at1/1111+13690877..13693803retrotransposon protein, putative, unclassified
LOC_Os11g24930NANA11+13694274..13700236retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31121.1.S1_at--975--7211Chr11:13669504..13669528 (25 bp)
GTCGAGTCACCGACTATCCGGGCAA
LOC_Os11g24850
OsAffx.31121.1.S1_at--975--4571NONE
GCGCAAGCAGCTGCCAATCAACATG
NONE
OsAffx.31121.1.S1_at--1035--5071Chr11:13669309..13669333 (25 bp)
GCAGCCTGCAACATTCATGAGGTGA
LOC_Os11g24850
OsAffx.31121.1.S1_at--43--8251Chr11:13669250..13669274 (25 bp)
GGCACAAGGGCACTGCGATCTGATC
LOC_Os11g24850
OsAffx.31121.1.S1_at--802--4051Chr11:13669119..13669143 (25 bp)
CGATCGCACGGTTCGCTCGGGACAG
LOC_Os11g24850
OsAffx.31121.1.S1_at--619--6031Chr11:13669072..13669096 (25 bp)
GAGATCCTGCGTGGCAAGAACTCGG
LOC_Os11g24850
OsAffx.31121.1.S1_at--496--3491Chr11:13668968..13668992 (25 bp)
CATGGCTTCGGAGCTGAATGGCTCT
LOC_Os11g24850
OsAffx.31121.1.S1_at--319--5291Chr11:13668953..13668977 (25 bp)
GAATGGCTCTGGGATGTCGCCGCTC
LOC_Os11g24850
OsAffx.31121.1.S1_at--360--4771Chr11:13668901..13668925 (25 bp)
GCTGCTGTTAGAGCGGTGCTGTCAT
LOC_Os11g24850
OsAffx.31121.1.S1_at--180--7991Chr11:13668872..13668896 (25 bp)
GGATGCATCGGCAGCAGGCCCTGAC
LOC_Os11g24850
OsAffx.31121.1.S1_at--159--891Chr11:13668857..13668881 (25 bp)
AGGCCCTGACTCACAGAACGCGTTG
LOC_Os11g24850
Target Sequence 
GTCGAGTCACCGACTATCCGGGCAACTCCGGCCGCGCAAGCAGCTGCCAATCAACATGCAGCCTGCAACATTCATGAGGT
GACTGCAGAGCGGAGCACGCTCCTCCACGTCGCCGCGGCACAAGGGCACTGCGATCTGATCGCCGAGCTGTGCCGCCGGG
ACAGCAACCTCCTCTCCGCGGCGAACTCGACGGGGGACACGCCGCTGCACTGCGTGGCGAGGGCGGGGCACACCGGAGCG
ATCCTGGCGATCGCACGGTTCGCTCGGGACAGCGTGGAGGAGGACAGGCTGAGGGAGATCCTGCGTGGCAAGAACTCGGC
GGGGGACACGGCGCTGCACCTCGCCGCGAGGCACGGCCATGGCGAAGCGGCTTCGGAGCTGGTCGCGATAGCCCCCGCCA
TGGCTTCGGAGCTGAATGGCTCTGGGATGTCGCCGCTCTACCTGGCGGTGATGAGCAGGTCAGTGGCTGCTGTTAGAGCG
GTGCTGTCATGTGGGGATGCATCGGCAGCAGGCCCTGACTCACAGAACGCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis