Browse Element(s) Details


OsAffx.19073.1.S1_x_at

Description tigr:9639.m02695
TID=OsAffx.19073.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2981011/11hypothetical protein
LOC_Os02g304201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29770OsAffx.31207.1.S1_at11/1111+16770605..16771999Zinc knuckle family protein
LOC_Os11g29780Os.18376.1.S1_at11/1111+16781300..16782677uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os11g29790OsAffx.31208.1.S1_at11/1111+16788372..16791560Leucine Rich Repeat family protein
LOC_Os11g29800OsAffx.31209.1.S1_at11/1111+16792974..16793385hypothetical protein
LOC_Os11g29810OsAffx.19073.1.S1_x_at11/1111+16796082..16796807hypothetical protein
LOC_Os11g29820NANA11+16805052..16805680hypothetical protein
LOC_Os11g29830OsAffx.31210.1.S1_at11/1111+16813769..16814014hypothetical protein
LOC_Os11g29840Os.27186.1.S1_at11/1111+16816190..16821713expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19073.1.S1_x_at--890--1051Chr11:16796319..16796343 (25 bp)
AGGGTGGGACACCACGCGCCGGAGC
LOC_Os11g29810
OsAffx.19073.1.S1_x_at--617--1711Chr11:16796329..16796353 (25 bp)
ACCACGCGCCGGAGCTCGGGTGCGG
LOC_Os11g29810
OsAffx.19073.1.S1_x_at--69--4771Chr11:16796353..16796377 (25 bp)
GCTGCTTCGGGTGCTACACGGCGTA
LOC_Os11g29810
OsAffx.19073.1.S1_x_at--599--9051Chr11:16796355..16796379 (25 bp)
TGCTTCGGGTGCTACACGGCGTACT
LOC_Os11g29810
OsAffx.19073.1.S1_x_at--480--10611Chr11:16796358..16796382 (25 bp)
TTCGGGTGCTACACGGCGTACTGGT
LOC_Os11g29810
OsAffx.19073.1.S1_x_at--526--3911Chr11:16796371..16796395 (25 bp)
CGGCGTACTGGTCGCGGTGGGACGG
LOC_Os11g29810
OsAffx.19073.1.S1_x_at--706--1772Chr11:16796425..16796449 (25 bp)
ACCGTGCCATCGAGGCGTTCGAGGA
LOC_Os11g29810
OsAffx.19073.1.S1_x_at--8--971Chr11:16796446..16796470 (25 bp)
AGGACCACCTCTCCCGCAAGGAGGA
LOC_Os11g29810
OsAffx.19073.1.S1_x_at--866--9311Chr11:16796634..16796658 (25 bp)
TCACCACCAAAATCGATTCTCGACG
LOC_Os11g29810
OsAffx.19073.1.S1_x_at--1037--1691Chr11:16796636..16796660 (25 bp)
ACCACCAAAATCGATTCTCGACGGG
LOC_Os11g29810
OsAffx.19073.1.S1_x_at--237--931Chr11:16796674..16796698 (25 bp)
AGGAAGAAATGAAGAACACCGCCGC
LOC_Os11g29810
Target Sequence 
AGGGTGGGACACCACGCGCCGGAGCTCGGGTGCGGCTGCTTCGGGTGCTACACGGCGTACTGGTCGCGGTGGGACGGGTC
CCCCGAGCGCGACCGCGACGCGATCCACCGTGCCATCGAGGCGTTCGAGGACCACCTCTCCCGCAAGGAGGAGGAGGAGG
TCGTCGGCGGCGGCAAGGGCGCCTCCTCCCGCCGCCGCAAGAAGCGCAGCGGCAAGGACAAGGCCAAGGCCAAGGTGCCG
CCCGCCGCCTCCGCCGGTCAGCCACCTCCGCCACCGCCCAACCAGGAGGAGACCTCCGCCGCCGCCGCCGCCGCCTCACC
ACCAAAATCGATTCTCGACGGGGAGGAGGAGGAAGAGGAAGAAATGAAGAACACCGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19073.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis