Browse Element(s) Details


OsAffx.31210.1.S1_at

Description tigr:9639.m02697
TID=OsAffx.31210.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2983011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29790OsAffx.31208.1.S1_at11/1111+16788372..16791560Leucine Rich Repeat family protein
LOC_Os11g29800OsAffx.31209.1.S1_at11/1111+16792974..16793385hypothetical protein
LOC_Os11g29810OsAffx.19073.1.S1_x_at11/1111+16796082..16796807hypothetical protein
LOC_Os11g29820NANA11+16805052..16805680hypothetical protein
LOC_Os11g29830OsAffx.31210.1.S1_at11/1111+16813769..16814014hypothetical protein
LOC_Os11g29840Os.27186.1.S1_at11/1111+16816190..16821713expressed protein
LOC_Os11g29850OsAffx.19074.1.S1_x_at11/1111+16827052..16830081ABC transporter family protein, expressed
LOC_Os11g29850Os.25312.1.S1_at9/1111+16827052..16830081ABC transporter family protein, expressed
LOC_Os11g29860OsAffx.31211.1.S1_at10/1111+16834181..16835092hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31210.1.S1_at--1161--7951Chr11:16813799..16813823 (25 bp)
GGATCCAGTGTCGTCGGCGTTGGGA
LOC_Os11g29830
OsAffx.31210.1.S1_at--513--571Chr11:16813801..16813825 (25 bp)
ATCCAGTGTCGTCGGCGTTGGGAGC
LOC_Os11g29830
OsAffx.31210.1.S1_at--795--4092Chr11:16813831..16813855 (25 bp)
CGACGATGATGAGTGGCGGCAGACT
LOC_Os11g29830
OsAffx.31210.1.S1_at--388--3951Chr11:16813847..16813871 (25 bp)
CGGCAGACTGCGGTGACGACGTCAT
LOC_Os11g29830
OsAffx.31210.1.S1_at--971--8251Chr11:16813848..16813872 (25 bp)
GGCAGACTGCGGTGACGACGTCATC
LOC_Os11g29830
OsAffx.31210.1.S1_at--435--5051Chr11:16813849..16813873 (25 bp)
GCAGACTGCGGTGACGACGTCATCA
LOC_Os11g29830
OsAffx.31210.1.S1_at--78--3431Chr11:16813850..16813874 (25 bp)
CAGACTGCGGTGACGACGTCATCAT
LOC_Os11g29830
OsAffx.31210.1.S1_at--814--7711Chr11:16813952..16813976 (25 bp)
GGTGGCATAGCTGACCACCCGCAAA
LOC_Os11g29830
OsAffx.31210.1.S1_at--664--8492Chr11:16813954..16813978 (25 bp)
TGGCATAGCTGACCACCCGCAAAAA
LOC_Os11g29830
OsAffx.31210.1.S1_at--774--8271Chr11:16813955..16813979 (25 bp)
GGCATAGCTGACCACCCGCAAAAAA
LOC_Os11g29830
OsAffx.31210.1.S1_at--112--3571Chr11:16813957..16813981 (25 bp)
CATAGCTGACCACCCGCAAAAAAAA
LOC_Os11g29830
Target Sequence 
GGATCCAGTGTCGTCGGCGTTGGGAGCGACGACGACGATGATGAGTGGCGGCAGACTGCGGTGACGACGTCATCATCGAC
GGCGGATTGGAGATGGGGTGGCATAGCTGACCACCCGCAAAAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis