Browse Element(s) Details


OsAffx.19074.1.S1_x_at

Description tigr:9639.m02699
TID=OsAffx.19074.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY085446 contains similarity to ABC transporter, ATP-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2985011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29820NANA11+16805052..16805680hypothetical protein
LOC_Os11g29830OsAffx.31210.1.S1_at11/1111+16813769..16814014hypothetical protein
LOC_Os11g29840Os.27186.1.S1_at11/1111+16816190..16821713expressed protein
LOC_Os11g29850OsAffx.19074.1.S1_x_at11/1111+16827052..16830081ABC transporter family protein, expressed
LOC_Os11g29850Os.25312.1.S1_at9/1111+16827052..16830081ABC transporter family protein, expressed
LOC_Os11g29860OsAffx.31211.1.S1_at10/1111+16834181..16835092hypothetical protein
LOC_Os11g29870Os.55827.1.S1_at11/1111+16849519..16853091WRKY DNA binding domain containing protein, expressed
LOC_Os11g29880Os.1709.1.S1_x_at3/1111+16854398..16860260retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19074.1.S1_x_at--710--1891Chr11:16828465..16828485 (21 bp)
ACTCGGTTGGTCTGAATGGCATTTC
LOC_Os11g29850
OsAffx.19074.1.S1_x_at--1121--6791Chr11:16828519..16828543 (25 bp)
GTTTAAACGGCGACTTGCTTTGGCA
LOC_Os11g29850
OsAffx.19074.1.S1_x_at--765--3891Chr11:16828655..16828677 (23 bp)
CTGGTCCAAACTCCTGATCTATTAT
LOC_Os11g29850
OsAffx.19074.1.S1_x_at--303--171Chr11:16828673..16828697 (25 bp)
ATTATTGCTTGATGAGCCTCTTGCT
LOC_Os11g29850
OsAffx.19074.1.S1_x_at--1107--4451Chr11:16828688..16829159 (25 bp)
GCCTCTTGCTGGTCTTGATTGGAAA
LOC_Os11g29850
OsAffx.19074.1.S1_x_at--992--9411Chr11:16829162..16829186 (25 bp)
TCGTGCTGACGTTGTGAATCTTCTC
LOC_Os11g29850
OsAffx.19074.1.S1_x_at--1003--311Chr11:16829211..16829235 (25 bp)
ATACTGGCTGTAAGTCATGACCTAA
LOC_Os11g29850
OsAffx.19074.1.S1_x_at--174--8211Chr11:16829442..16829466 (25 bp)
GGAATTGTACCCACTAGTTGACCGC
LOC_Os11g29850
OsAffx.19074.1.S1_x_at--441--5391Chr11:16829503..16829659 (25 bp)
GAAGCTTTATCTGTTTACAAATCAA
LOC_Os11g29850
OsAffx.19074.1.S1_x_at--181--5691Chr11:16829695..16829719 (25 bp)
GACTTGTGCAGTTTGAGAATTTCAG
LOC_Os11g29850
OsAffx.19074.1.S1_x_at--1150--7171Chr11:16829802..16829826 (25 bp)
GTCTGATGCAGATTTTTGCCTGGGT
LOC_Os11g29850
Target Sequence 
ACTCGGTTGGTCTGAATGGCATTTCATTGGAAGAAGATCCACAATCTCTAAGTGGTGGGTTTAAACGGCGACTTGCTTTG
GCAATTCAACTGGTCCAAACTCCTGATCTATTATTGCTTGATGAGCCTCTTGCTGGTCTTGATTGGAAAGCTCGTGCTGA
CGTTGTGAATCTTCTCAAGGACCTAAAGAAGGATCATACTATACTGGCTGTAAGTCATGACCTAAGGGAATTGTACCCAC
TAGTTGACCGCTCATGGAGAATGGAAATGGGGGGAGTTTTGAAGGAAGAAGCTTTATCTGTTTACAAATCAAGGATGGTC
GTAACTAAATTATTTGGTCATAAGTATGACTTGTGCAGTTTGAGAATTTCAGGAGCAAGCAAATGCAAGCAGAACTTCAA
TGGAGAGATAATTGATTTTTCTCCAAATTCCCACCGCTGGAACGAAGAAACAATGTCTGATGCAGATTTTTGCCTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19074.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis