Browse Element(s) Details


OsAffx.31211.1.S1_at

Description tigr:9639.m02700
TID=OsAffx.31211.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2986010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29830OsAffx.31210.1.S1_at11/1111+16813769..16814014hypothetical protein
LOC_Os11g29840Os.27186.1.S1_at11/1111+16816190..16821713expressed protein
LOC_Os11g29850OsAffx.19074.1.S1_x_at11/1111+16827052..16830081ABC transporter family protein, expressed
LOC_Os11g29850Os.25312.1.S1_at9/1111+16827052..16830081ABC transporter family protein, expressed
LOC_Os11g29860OsAffx.31211.1.S1_at10/1111+16834181..16835092hypothetical protein
LOC_Os11g29870Os.55827.1.S1_at11/1111+16849519..16853091WRKY DNA binding domain containing protein, expressed
LOC_Os11g29880Os.1709.1.S1_x_at3/1111+16854398..16860260retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31211.1.S1_at--813--6471NONE
GATACATGGAATATATTGTCCAGAT
NONE
OsAffx.31211.1.S1_at--66--231Chr11:16834794..16835004 (25 bp)
ATATTGTCCAGATTAATGGCGGTCA
LOC_Os11g29860
OsAffx.31211.1.S1_at--1150--10791Chr11:16834987..16835007 (21 bp)
TTGTCCAGATTAATGGCGGTCAAAC
LOC_Os11g29860
OsAffx.31211.1.S1_at--259--7271Chr11:16834987..16835009 (23 bp)
GTCCAGATTAATGGCGGTCAAACAA
LOC_Os11g29860
OsAffx.31211.1.S1_at--192--131Chr11:16834991..16835015 (25 bp)
ATTAATGGCGGTCAAACAAGCAGGC
LOC_Os11g29860
OsAffx.31211.1.S1_at--631--9771Chr11:16834993..16835017 (25 bp)
TAATGGCGGTCAAACAAGCAGGCCA
LOC_Os11g29860
OsAffx.31211.1.S1_at--402--4431Chr11:16835014..16835038 (25 bp)
GCCATGGCTCACCAATTCTGAGGCT
LOC_Os11g29860
OsAffx.31211.1.S1_at--70--871Chr11:16835017..16835041 (25 bp)
ATGGCTCACCAATTCTGAGGCTCAG
LOC_Os11g29860
OsAffx.31211.1.S1_at--561--4831Chr11:16835020..16835044 (25 bp)
GCTCACCAATTCTGAGGCTCAGCTT
LOC_Os11g29860
OsAffx.31211.1.S1_at--1077--6191Chr11:16835033..16835057 (25 bp)
GAGGCTCAGCTTTGTCATAGAGCTC
LOC_Os11g29860
OsAffx.31211.1.S1_at--963--8311Chr11:16835035..16835059 (25 bp)
GGCTCAGCTTTGTCATAGAGCTCCA
LOC_Os11g29860
Target Sequence 
GATACATGGAATATATTGTCCAGATTAATGGCGGTCAAACAAGCAGGCCATGGCTCACCAATTCTGAGGCTCAGCTTTGT
CATAGAGCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis