Browse Element(s) Details


Os.25312.1.S1_at

Description gb:AK106821.1
DB_XREF= gi:32992030
TID=Os.25312.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25312 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-E03, full insert sequence.
FL= gb:AK106821.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g298509/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29820NANA11+16805052..16805680hypothetical protein
LOC_Os11g29830OsAffx.31210.1.S1_at11/1111+16813769..16814014hypothetical protein
LOC_Os11g29840Os.27186.1.S1_at11/1111+16816190..16821713expressed protein
LOC_Os11g29850OsAffx.19074.1.S1_x_at11/1111+16827052..16830081ABC transporter family protein, expressed
LOC_Os11g29850Os.25312.1.S1_at9/1111+16827052..16830081ABC transporter family protein, expressed
LOC_Os11g29860OsAffx.31211.1.S1_at10/1111+16834181..16835092hypothetical protein
LOC_Os11g29870Os.55827.1.S1_at11/1111+16849519..16853091WRKY DNA binding domain containing protein, expressed
LOC_Os11g29880Os.1709.1.S1_x_at3/1111+16854398..16860260retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25312.1.S1_at--163--991Chr11:16829520..16829544 (25 bp)
AGGATGCTTCTGTTTGTACTGTCAA
LOC_Os11g29850
Os.25312.1.S1_at--667--6991Chr11:16829535..16829559 (25 bp)
GTACTGTCAATCAAGCTGGCACTGT
LOC_Os11g29850
Os.25312.1.S1_at--293--5111Chr11:16829553..16829577 (25 bp)
GCACTGTATACTAGCTGTCTCCAGA
LOC_Os11g29850
Os.25312.1.S1_at--398--7071Chr11:16829825..16829849 (25 bp)
GTAAGGGTAAGATGCCTGTCTGCCA
LOC_Os11g29850
Os.25312.1.S1_at--833--3871Chr11:16829840..16829864 (25 bp)
CTGTCTGCCAGGTAGCTGAATTCCA
LOC_Os11g29850
Os.25312.1.S1_at--280--3851Chr11:16829855..16829879 (25 bp)
CTGAATTCCAACTCCAGAACTGCAT
LOC_Os11g29850
Os.25312.1.S1_at--189--331Chr11:16829878..16829902 (25 bp)
ATAAGCCATTCCTCCGGGACAGGGT
LOC_Os11g29850
Os.25312.1.S1_at--471--2411Chr11:16830033..16830057 (25 bp)
AAAAACCTTGTTCTACTGCCTGACT
LOC_Os11g29850
Os.25312.1.S1_at--977--9171Chr11:16830049..16830073 (25 bp)
TGCCTGACTATTCCATTCGCGTATG
LOC_Os11g29850
Os.25312.1.S1_at--457--91Chr11:16830063..16830087 (25 bp)
ATTCGCGTATGTACAACCCGTTCTC
NONE
Os.25312.1.S1_at--32--6731Chr11:16830082..16830106 (25 bp)
GTTCTCCTCCAGATTTCTTTGATCT
NONE
Target Sequence 
AGGATGCTTCTGTTTGTACTGTCAATCAAGCTGGCACTGTATACTAGCTGTCTCCAGATCAGGAGCAAGCAAATGCAAGC
AGAACTTCAATGGAGAGATAATTGATTTTTCCCCAAATTCCCACCGCTGGAACGAAGAAACAATGTCTGATGCAGATTTT
TGCCTGGGTAAGGGTAAGATGCCTGTCTGCCAGGTAGCTGAATTCCAACTCCAGAACTGCATAAGCCATTCCTCCGGGAC
AGGGTTCTGCAAAAAAATGCAGGGTTCGCATAAAAACCTGTATAATTTGGAATGCAGAGCAAAACAACACTGAACATCAC
ACTGACATTTATGCTGAAGAGGAGCTAACTGATTGTGCTACTGTTAGGAAACATAAAAAACCTTGTTCTACTGCCTGACT
ATTCCATTCGCGTATGTACAACCCGTTCTCCTCCAGATTTCTTTGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis