Browse Element(s) Details


OsAffx.19128.1.S1_at

Description tigr:9639.m02974
TID=OsAffx.19128.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3270011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32660NANA11+18786857..18790299transposon protein, putative, Mutator sub-class
LOC_Os11g32670OsAffx.19127.1.S1_at11/1111+18790906..18791428GRF zinc finger family protein
LOC_Os11g32680Os.14491.2.S1_x_at3/1111+18793682..18797391transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g32680Os.47463.1.S1_x_at2/1111+18793682..18797391transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g32690NANA11+18799927..18802122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g32700OsAffx.19128.1.S1_at11/1111+18807209..18807644hypothetical protein
LOC_Os11g32710NANA11+18818119..18818421hypothetical protein
LOC_Os11g32720Os.26803.1.S1_at11/1111+18829542..18834002Zinc knuckle family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19128.1.S1_at--474--111Chr11:18807589..18807613 (25 bp)
ATTCGGCAGCGGCAATCCATGCTGT
LOC_Os11g32700
OsAffx.19128.1.S1_at--415--9452Chr03:27793224..27793466 (25 bp)
TCGGCAGCGGCAATCCATGCTGTGT
NONE
OsAffx.19128.1.S1_at--515--3391Chr11:18807583..18807607 (25 bp)
CAGCGGCAATCCATGCTGTGTGGTT
LOC_Os11g32700
OsAffx.19128.1.S1_at--695--4691Chr11:18807581..18807605 (25 bp)
GCGGCAATCCATGCTGTGTGGTTGA
LOC_Os11g32700
OsAffx.19128.1.S1_at--472--3951Chr11:18807580..18807604 (25 bp)
CGGCAATCCATGCTGTGTGGTTGAA
LOC_Os11g32700
OsAffx.19128.1.S1_at--278--3191Chr11:18807577..18807601 (25 bp)
CAATCCATGCTGTGTGGTTGAAGCC
LOC_Os11g32700
OsAffx.19128.1.S1_at--593--571Chr11:18807575..18807599 (25 bp)
ATCCATGCTGTGTGGTTGAAGCCGC
LOC_Os11g32700
OsAffx.19128.1.S1_at--948--9231Chr11:18807574..18807598 (25 bp)
TCCATGCTGTGTGGTTGAAGCCGCC
LOC_Os11g32700
OsAffx.19128.1.S1_at--749--611Chr11:18807571..18807595 (25 bp)
ATGCTGTGTGGTTGAAGCCGCCCGA
LOC_Os11g32700
OsAffx.19128.1.S1_at--760--8651Chr11:18807567..18807591 (25 bp)
TGTGTGGTTGAAGCCGCCCGAGGCT
LOC_Os11g32700
OsAffx.19128.1.S1_at--772--5751Chr11:18807511..18807535 (25 bp)
GACGGTGGCGGATTGGGCCGCCCGA
LOC_Os11g32700
Target Sequence 
ATTCGGCAGCGGCAATCCATGCTGTGTGGTTGAAGCCGCCCGAGGCTGAGCGGCGGCGGATCCGCACGCCCAAGGCCCGA
CGGTGGCGGATTGGGCCGCCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis