Browse Element(s) Details


OsAffx.19222.1.S1_at

Description tigr:9639.m03424
TID=OsAffx.19222.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3778011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37774Os.52399.1.S1_x_at2/1111+21849960..21855075NB-ARC domain containing protein, expressed
LOC_Os11g37774Os.27037.1.A1_at1/1111+21849960..21855075NB-ARC domain containing protein, expressed
LOC_Os11g37780OsAffx.19222.1.S1_at11/1111+21865655..21869369NB-ARC domain containing protein
LOC_Os11g37790OsAffx.7330.1.S1_at11/1111+21881096..21883438NB-ARC domain containing protein
LOC_Os11g37800OsAffx.31352.1.S1_at11/1111+21883881..21888453Mla1, putative
LOC_Os11g37810NANA11+21892814..21893353hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19222.1.S1_at--908--8251Chr11:21868843..21868867 (25 bp)
GGCAGCTCCGTGAGTTCTATCTGAG
LOC_Os11g37780
OsAffx.19222.1.S1_at--462--10251Chr11:21868871..21868895 (25 bp)
TTGGACTGGTTTCTTGCCTCGACTA
LOC_Os11g37780
OsAffx.19222.1.S1_at--635--671Chr11:21868944..21868968 (25 bp)
ATGAAAGTGCTTGCCATGGAACCAT
LOC_Os11g37780
OsAffx.19222.1.S1_at--732--391Chr11:21868967..21868991 (25 bp)
ATGGGACCTAGACACCCTTGGGAGA
LOC_Os11g37780
OsAffx.19222.1.S1_at--325--3811Chr11:21869010..21869034 (25 bp)
CTCCGCAGGCGTATTTGCACGAAGA
LOC_Os11g37780
OsAffx.19222.1.S1_at--527--5271Chr11:21869045..21869069 (25 bp)
GACGGTTGGTTGTGGATTGTTCCCA
LOC_Os11g37780
OsAffx.19222.1.S1_at--160--9311Chr11:21869065..21869089 (25 bp)
TCCCAAACCTGCGATACTGCATGAT
LOC_Os11g37780
OsAffx.19222.1.S1_at--946--5831Chr11:21869162..21869186 (25 bp)
GAGCCTTGGTGTTCCCAACGACGTT
LOC_Os11g37780
OsAffx.19222.1.S1_at--849--7291Chr11:21869215..21869239 (25 bp)
GTGCCCATATTTCCCTTGAGTGCAA
LOC_Os11g37780
OsAffx.19222.1.S1_at--353--8971Chr11:21869276..21869300 (25 bp)
TGAACTGAGGCGCTATCACCCGAAT
LOC_Os11g37780
OsAffx.19222.1.S1_at--401--9191Chr11:21869306..21869330 (25 bp)
TGCCATTTATGTGTTCCGCTTAGAT
LOC_Os11g37780
Target Sequence 
GGCAGCTCCGTGAGTTCTATCTGAGTGGTTGGACTGGTTTCTTGCCTCGACTACCGGCCTGGATGAACTCCAAGCGCATC
CCGAACCTCTCCAAACTGGACATGAAAGTGCTTGCCATGGAACCATGGGACCTAGACACCCTTGGGAGAATGCCGATGCT
CCACTACCTCCGCAGGCGTATTTGCACGAAGATATCTTCATGGACGGTTGGTTGTGGATTGTTCCCAAACCTGCGATACT
GCATGATGAACATAGAGCTCAAGTTTCTGCAGGGAGTGATGCCAATGCTCATGGAGATTGAATTTTATGTGTCGGCGTCG
AGCCTTGGTGTTCCCAACGACGTTGGATTGGGGAACCTCCCACTGCTCAACTGTGCCCATATTTCCCTTGAGTGCAAGGG
TGCGACAGGGAGGCAGGTGGAGGAAGCAGAGATTGAACTGAGGCGCTATCACCCGAATCGTCCTGCCATTTATGTGTTCC
GCTTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis