Browse Element(s) Details


OsAffx.19327.1.S1_at

Description tigr:9639.m03883
TID=OsAffx.19327.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4217011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42130NANA11+24870585..24873821transposon protein, putative, unclassified
LOC_Os11g42140NANA11+24874452..24880610transposon protein, putative, unclassified
LOC_Os11g42150OsAffx.7382.1.S1_at11/1111+24881400..24883829hypothetical protein
LOC_Os11g42160Os.26855.1.A1_at10/1111+24892696..24898109Leucine Rich Repeat family protein, expressed
LOC_Os11g42170OsAffx.19327.1.S1_s_at11/1111+24898612..24899505expressed protein
LOC_Os11g42170OsAffx.19327.1.S1_at11/1111+24898612..24899505expressed protein
LOC_Os11g42180Os.14491.2.S1_x_at2/1111+24904733..24907677transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g42190NANA11+24907885..24914979transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g42200Os.54291.1.S1_at10/1111+24922346..24924690Multicopper oxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19327.1.S1_at--920--2711Chr11:24898881..24898905 (25 bp)
AAGCACTGAAGTGGCGACGAGCAAT
LOC_Os11g42170
OsAffx.19327.1.S1_at--91--3331Chr11:24898884..24898908 (25 bp)
CACTGAAGTGGCGACGAGCAATGGA
LOC_Os11g42170
OsAffx.19327.1.S1_at--1091--2731Chr11:24898934..24898958 (25 bp)
AAGAAGGTGGCCGTCGTAATGATCC
LOC_Os11g42170
OsAffx.19327.1.S1_at--677--2891Chr11:24898937..24898961 (25 bp)
AAGGTGGCCGTCGTAATGATCCTCC
LOC_Os11g42170
OsAffx.19327.1.S1_at--601--7551Chr11:24898940..24898964 (25 bp)
GTGGCCGTCGTAATGATCCTCCGGT
LOC_Os11g42170
OsAffx.19327.1.S1_at--731--4011Chr11:24898945..24898969 (25 bp)
CGTCGTAATGATCCTCCGGTGGCTG
LOC_Os11g42170
OsAffx.19327.1.S1_at--892--9391Chr11:24898947..24898971 (25 bp)
TCGTAATGATCCTCCGGTGGCTGCA
LOC_Os11g42170
OsAffx.19327.1.S1_at--1098--2991Chr11:24898951..24898975 (25 bp)
AATGATCCTCCGGTGGCTGCAGAAG
LOC_Os11g42170
OsAffx.19327.1.S1_at--970--711Chr11:24898952..24898976 (25 bp)
ATGATCCTCCGGTGGCTGCAGAAGC
LOC_Os11g42170
OsAffx.19327.1.S1_at--104--4051Chr11:24899036..24899060 (25 bp)
CGATCAAGGAGGAATCCGGCGCGGC
LOC_Os11g42170
OsAffx.19327.1.S1_at--899--9371Chr11:24899248..24899272 (25 bp)
TCGAGCTTCATAGAGGAGCGCAAGA
LOC_Os11g42170
Target Sequence 
AAGCACTGAAGTGGCGACGAGCAATGGAGGAGCAAGTGTGCAGAAGGAGGACGAAGAAGGTGGCCGTCGTAATGATCCTC
CGGTGGCTGCAGAAGCTGCGACGGTGGCGGAGGCGGCGCCGGTGAAGGAGGAGAAGAAGGTGAAGAAGACGGTGGCGATC
AAGGAGGAATCCGGCGCGGCGGCGGCGGCGGGGTCGGCGTCGTCGGCGGTGAAGAGGTTGCTGTCCAAGAAGAGGCAGGC
GTCGTCGAGCCAGCTCGGAGGGGATCACGACGGCGGCCAGCAGACGAAGCCGCCGGCGAGGCGGCCGGGGCTCCGGCCGA
GGATGCCGTCGATCCTGAGGGTGCCGTCCAACATCAACGAGAAGTCGTCGAGCTTCATAGAGGAGCGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis