Browse Element(s) Details


OsAffx.19333.1.S1_at

Description tigr:9639.m03911
TID=OsAffx.19333.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Pto kinase interactor-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4244011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42400NANA11+25017803..25018554hypothetical protein
LOC_Os11g42410NANA11+25021292..25024910expressed protein
LOC_Os11g42420Os.8764.1.A1_a_at11/1111+25026877..25035897Nuclear pore protein 84/107 containing protein, expressed
LOC_Os11g42430OsAffx.19332.1.S1_at11/1111+25035988..25039028Sugar transporter family protein, expressed
LOC_Os11g42440OsAffx.19333.1.S1_at11/1111+25041385..25046180Protein kinase domain containing protein, expressed
LOC_Os11g42450OsAffx.31440.1.S1_at11/1111+25050757..25051950Leucine Rich Repeat family protein, expressed
LOC_Os11g42459NANA11+25066871..25067641NA

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19333.1.S1_at--1104--7011Chr11:25044312..25044336 (25 bp)
GTACACTCTTCGACATACCGTTAGT
LOC_Os11g42440
OsAffx.19333.1.S1_at--451--9971Chr11:25044327..25044351 (25 bp)
TACCGTTAGTTATTTCTGCATGTGC
LOC_Os11g42440
OsAffx.19333.1.S1_at--778--6291Chr11:25044382..25044406 (25 bp)
GATGATCATTCATGGCGGCGTGCGT
LOC_Os11g42440
OsAffx.19333.1.S1_at--1113--6291Chr11:25044505..25044529 (25 bp)
GATGATGGTGGATCCTGCTCTCGGC
LOC_Os11g42440
OsAffx.19333.1.S1_at--734--471Chr11:25044578..25044602 (25 bp)
ATCTGCATACAGAACTCGCCGGAGC
LOC_Os11g42440
OsAffx.19333.1.S1_at--385--991Chr11:25045582..25045606 (25 bp)
AGGAGGACTTTCACCTTGGATCGCA
LOC_Os11g42440
OsAffx.19333.1.S1_at--796--7971Chr11:25045599..25045623 (25 bp)
GGATCGCACCGTTGAGATGCACGAA
LOC_Os11g42440
OsAffx.19333.1.S1_at--971--5451Chr11:25045626..25045650 (25 bp)
GAACGGCCAGGATTCCGCGACGAGA
LOC_Os11g42440
OsAffx.19333.1.S1_at--737--4091Chr11:25045643..25045667 (25 bp)
CGACGAGACGACAGCTGGACGATCT
LOC_Os11g42440
OsAffx.19333.1.S1_at--930--8531Chr11:25045658..25045682 (25 bp)
TGGACGATCTGAGGCGCCACATGGC
LOC_Os11g42440
OsAffx.19333.1.S1_at--469--871Chr11:25045678..25045702 (25 bp)
ATGGCGCTCGCCTTCGATTTCGAAT
LOC_Os11g42440
Target Sequence 
GTACACTCTTCGACATACCGTTAGTTATTTCTGCATGTGCACGGATGCAATATGCAACCAATCATGGAGTGATGATCATT
CATGGCGGCGTGCGTGTCCGCGTGATCCACCGCGTGTCATCGTCTCTGCAGGCCAGGCCGTTCCTGTACGGAGGAGGCGG
TGATGGCGACGATGATGACGACGACGCGGTGAGGATGATGGTGGATCCTGCTCTCGGCGGCCAGTACGACGCCGGGCAGC
TCGCCGTCGTCGCCTACGCCGCCAAGATCTGCATACAGAACTCGCCGGAGCTCAGGCCCAAAATGAGCGAGGTTACACAG
ATACTCCAAGAAAACGAAGAGGATCGACGAAGTGTGGAGGGGTCTAGGAGGACTTTCACCTTGGATCGCACCGTTGAGAT
GCACGAAACGAACGGCCAGGATTCCGCGACGAGACGACAGCTGGACGATCTGAGGCGCCACATGGCGCTCGCCTTCGATT
TCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis