Browse Element(s) Details


OsAffx.19340.3.S1_at

Description tigr:9639.m03940
TID=OsAffx.19340.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4270011/11hypothetical protein
LOC_Os11g425903/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42660OsAffx.31444.1.S1_at11/1111+25193894..25198668Leucine Rich Repeat family protein, expressed
LOC_Os11g42670OsAffx.19337.1.S1_at11/1111+25201725..25202292hypothetical protein
LOC_Os11g42680OsAffx.19338.1.S1_at11/1111+25207525..25208238hypothetical protein
LOC_Os11g42690OsAffx.19339.1.S1_at11/1111+25210018..25210251hypothetical protein
LOC_Os11g42700OsAffx.19340.3.S1_at11/1111+25219226..25220437hypothetical protein
LOC_Os11g42710NANA11+25222702..25228060retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g42720OsAffx.19340.2.S1_at3/1111+25230969..25235648retrotransposon protein, putative, unclassified
LOC_Os11g42730OsAffx.31445.1.S1_at2/1111+25236454..25236801lipase class 3 family protein, putative
LOC_Os11g42730OsAffx.31445.1.S1_x_at2/1111+25236454..25236801lipase class 3 family protein, putative
LOC_Os11g42740NANA11+25240164..25240661hypothetical protein
LOC_Os11g42750NANA11+25244861..25246237retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19340.3.S1_at--481--10071Chr11:25219636..25219660 (25 bp)
TAGTGCCACCACAGGAGCACAAGCA
LOC_Os11g42700
OsAffx.19340.3.S1_at--689--2771Chr11:25219701..25219725 (25 bp)
AAGACCAAGAATACGACTCGGCTAG
LOC_Os11g42700
OsAffx.19340.3.S1_at--86--5691Chr11:25219715..25219955 (25 bp)
GACTCGGCTAGAGCCAATGCACGCG
LOC_Os11g42700
OsAffx.19340.3.S1_at--868--4271Chr11:25220074..25220098 (25 bp)
CCTGCGTGAATGTGAATCTCTCAAG
LOC_Os11g42700
OsAffx.19340.3.S1_at--640--3291Chr11:25220107..25220131 (25 bp)
CAAAGATCATGGTCAGGTGGACGAC
LOC_Os11g42700
OsAffx.19340.3.S1_at--51--1791Chr11:25220130..25220154 (25 bp)
ACCGGGATGATCAATGGGAGGCTTA
LOC_Os11g42700
OsAffx.19340.3.S1_at--685--8292Chr11:25220149..25220173 (25 bp)
GGCTTACTATTATTACAGATGGGAC
LOC_Os11g42700
OsAffx.19340.3.S1_at--925--252Chr11:25220184..25220208 (25 bp)
ATATCCATAGGGACTTTTATCGACA
LOC_Os11g42700
OsAffx.19340.3.S1_at--66--5672Chr11:25220195..25220219 (25 bp)
GACTTTTATCGACAGGTTAATCCTA
LOC_Os11g42700
OsAffx.19340.3.S1_at--292--8871Chr11:25220341..25220365 (25 bp)
TGATGGTAGTATGTCACGCCCCAAA
LOC_Os11g42700
OsAffx.19340.3.S1_at--511--1932Chr11:25220376..25220400 (25 bp)
ACGGCGGCCAGAGTAAGGCGATCCA
LOC_Os11g42700
Target Sequence 
TAGTGCCACCACAGGAGCACAAGCACCAGACGAGGAAGATGAAGACGAGGAGGAGGAGGAGCAGCAAGACCAAGAATACG
ACTCGGCTAGAGCCAATGCACGCGATGCTTTGGCTTCCATGGAGACCACCCATTTCGACCGCTCTGTGTGGATCAACCTC
CAGGCTTTGCATCTCCACCGCTCTTGGCACCAAATCAGCACCGAGGCCATCCTCTGCTACATCCTGCGTGAATGTGAATC
TCTCAAGAAGCGAGGCAAAGATCATGGTCAGGTGGACGACCGGGATGATCAATGGGAGGCTTACTATTATTACAGATGGG
ACATATTGTATGATATCCATAGGGACTTTTATCGACAGGTTAATCCTAAGATGGAAGAAATCGAGGGTAATATTACTAAG
AACAGTGCTGCAGAAGAAGAACAAGAAGAGAAAAGTAAAGGAGAAGCTGCATATGGAAACCAGACTGAAGACGAAATCCC
CTCAACCCCTGATGGTAGTATGTCACGCCCCAAACTAGCCCCGAACGGCGGCCAGAGTAAGGCGATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19340.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis