Browse Element(s) Details


OsAffx.19395.1.S1_at

Description tigr:9639.m04264
TID=OsAffx.19395.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4577011/11hypothetical protein
LOC_Os03g082701/11Ataxin-2 C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45740Os.2867.1.A1_at11/1111+27163514..27166514expressed protein
LOC_Os11g45750Os.50411.2.S1_x_at11/1111+27176833..27188263NB-ARC domain containing protein, expressed
LOC_Os11g45750Os.50411.1.S1_at11/1111+27176833..27188263NB-ARC domain containing protein, expressed
LOC_Os11g45750Os.50411.2.S1_at10/1111+27176833..27188263NB-ARC domain containing protein, expressed
LOC_Os11g45760OsAffx.31500.1.S1_at11/1111+27184392..27187611NB-ARC domain containing protein, expressed
LOC_Os11g45770OsAffx.19395.1.S1_at11/1111+27188074..27188939hypothetical protein
LOC_Os11g45780OsAffx.19396.1.S1_at11/1111+27194263..27195076RGH2A, putative
LOC_Os11g45790OsAffx.31500.1.S1_at2/1111+27196967..27200406NB-ARC domain containing protein, expressed
LOC_Os11g45800NANA11+27208594..27208860hypothetical protein
LOC_Os11g45810NANA11+27210837..27211571hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006298biological_processmismatch repair
GO:0003684molecular_functiondamaged DNA binding
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19395.1.S1_at--372--7011Chr11:27188136..27188444 (25 bp)
GTACTCGCAGAACCAGATACCTCGT
LOC_Os11g45770
OsAffx.19395.1.S1_at--1067--9311Chr11:27188426..27188448 (23 bp)
TCGCAGAACCAGATACCTCGTACCT
LOC_Os11g45770
OsAffx.19395.1.S1_at--655--3791Chr11:27188447..27188471 (25 bp)
CTCCATCGACTATCAATACCAGTTT
LOC_Os11g45770
OsAffx.19395.1.S1_at--298--311Chr11:27188462..27188486 (25 bp)
ATACCAGTTTGTTTTGACTCTCTTG
LOC_Os11g45770
OsAffx.19395.1.S1_at--308--3451Chr11:27188466..27188490 (25 bp)
CAGTTTGTTTTGACTCTCTTGGCAG
LOC_Os11g45770
OsAffx.19395.1.S1_at--1108--6791Chr11:27188472..27188496 (25 bp)
GTTTTGACTCTCTTGGCAGTTTGCA
LOC_Os11g45770
OsAffx.19395.1.S1_at--560--8251Chr11:27188486..27188510 (25 bp)
GGCAGTTTGCAAGGCAGTTTCAGCT
LOC_Os11g45770
OsAffx.19395.1.S1_at--580--5031Chr11:27188499..27188523 (25 bp)
GCAGTTTCAGCTTATGTGGAGCCTA
LOC_Os11g45770
OsAffx.19395.1.S1_at--937--10431Chr11:27188510..27188534 (25 bp)
TTATGTGGAGCCTACTCCCTCCATT
LOC_Os11g45770
OsAffx.19395.1.S1_at--764--1993Chr11:27188523..27188547 (25 bp)
ACTCCCTCCATTCCACAAAAAATGA
LOC_Os11g45770
OsAffx.19395.1.S1_at--235--5472Chr11:27188553..27188577 (25 bp)
GAACTGGATATGACACATTTTAATA
LOC_Os11g45770
Target Sequence 
GTACTCGCAGAACCAGATACCTCGTACCTCCATCGACTATCAATACCAGTTTGTTTTGACTCTCTTGGCAGTTTGCAAGG
CAGTTTCAGCTTATGTGGAGCCTACTCCCTCCATTCCACAAAAAATGAATATAGAACTGGATATGACACATTTTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19395.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis