Browse Element(s) Details


OsAffx.19396.1.S1_at

Description tigr:9639.m04265
TID=OsAffx.19396.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NBS-LRR, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4578011/11RGH2A, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45750Os.50411.2.S1_x_at11/1111+27176833..27188263NB-ARC domain containing protein, expressed
LOC_Os11g45750Os.50411.1.S1_at11/1111+27176833..27188263NB-ARC domain containing protein, expressed
LOC_Os11g45750Os.50411.2.S1_at10/1111+27176833..27188263NB-ARC domain containing protein, expressed
LOC_Os11g45760OsAffx.31500.1.S1_at11/1111+27184392..27187611NB-ARC domain containing protein, expressed
LOC_Os11g45770OsAffx.19395.1.S1_at11/1111+27188074..27188939hypothetical protein
LOC_Os11g45780OsAffx.19396.1.S1_at11/1111+27194263..27195076RGH2A, putative
LOC_Os11g45790OsAffx.31500.1.S1_at2/1111+27196967..27200406NB-ARC domain containing protein, expressed
LOC_Os11g45800NANA11+27208594..27208860hypothetical protein
LOC_Os11g45810NANA11+27210837..27211571hypothetical protein
LOC_Os11g45820OsAffx.19397.1.S1_s_at11/1111+27217028..27219220expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19396.1.S1_at--323--5851Chr11:27194830..27194854 (25 bp)
GACCACTATGAGCATGCCATGGCCA
LOC_Os11g45780
OsAffx.19396.1.S1_at--13--891Chr11:27194812..27194836 (25 bp)
ATGGCCAACTCTCGAAGCGGATTTA
LOC_Os11g45780
OsAffx.19396.1.S1_at--475--9751Chr11:27194789..27194813 (25 bp)
TAATGATAATATTCGCCGCCGTAAG
LOC_Os11g45780
OsAffx.19396.1.S1_at--1030--4931Chr11:27194753..27194777 (25 bp)
GCATGGGAACAAGCTGCCACCTTGG
LOC_Os11g45780
OsAffx.19396.1.S1_at--79--9211Chr11:27194739..27194763 (25 bp)
TGCCACCTTGGGTTCAAGAGAAGCT
LOC_Os11g45780
OsAffx.19396.1.S1_at--1042--8891Chr11:27194685..27194709 (25 bp)
TGAGAGAGTTCAGCACACGCGCGCA
LOC_Os11g45780
OsAffx.19396.1.S1_at--515--10571Chr11:27194554..27194578 (25 bp)
TTCTTTGCGTCCTGTGCGGTGCGAG
LOC_Os11g45780
OsAffx.19396.1.S1_at--598--5511Chr11:27194488..27194512 (25 bp)
GAACAAGCTCGAGGACTATCTGTCT
LOC_Os11g45780
OsAffx.19396.1.S1_at--427--8131Chr11:27194476..27194500 (25 bp)
GGACTATCTGTCTGGACACGCAGGA
LOC_Os11g45780
OsAffx.19396.1.S1_at--72--5411Chr11:27194446..27194470 (25 bp)
GAAGCTCAGGGTGTTGTCTATTGTT
LOC_Os11g45780
OsAffx.19396.1.S1_at--294--3991Chr11:27194337..27194361 (25 bp)
CGGGCATCCCAGAAGCCTGATATGA
LOC_Os11g45780
Target Sequence 
GACCACTATGAGCATGCCATGGCCAACTCTCGAAGCGGATTTAATGATAATATTCGCCGCCGTAAGTTCAACCGGCGGCA
TGGGAACAAGCTGCCACCTTGGGTTCAAGAGAAGCTGAAGCAGCGGCTATGGATGGCCAACAAGATGAGAGAGTTCAGCA
CACGCGCGCAGGAGGCGCTTCAACGCCATGCCATCTCTTCTTTGCGTCCTGTGCGGTGCGAGGAACGTGCCGAGGACGTC
CTTGTTGGGGTTGACTCCGCCATGAACAAGCTCGAGGACTATCTGTCTGGACACGCAGGAGAGGAGAAGCTCAGGGTGTT
GTCTATTGTTGGATTTGGAGGAATCGGGAAGACCACTCTTGCCAACGAGCTGTACAGAAAAATTGGACGGCAATTTGAGT
GCCGGGCATTTGTGCGGGCATCCCAGAAGCCTGATATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis