Browse Element(s) Details


OsAffx.19397.1.S1_s_at

Description tigr:9639.m04269
TID=OsAffx.19397.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4582011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45780OsAffx.19396.1.S1_at11/1111+27194263..27195076RGH2A, putative
LOC_Os11g45790OsAffx.31500.1.S1_at2/1111+27196967..27200406NB-ARC domain containing protein, expressed
LOC_Os11g45800NANA11+27208594..27208860hypothetical protein
LOC_Os11g45810NANA11+27210837..27211571hypothetical protein
LOC_Os11g45820OsAffx.19397.1.S1_s_at11/1111+27217028..27219220expressed protein
LOC_Os11g45840NANA11+27227764..27230508NBS-LRR disease resistance protein, putative
LOC_Os11g45850OsAffx.31501.1.S1_at11/1111+27233334..27234376WRKY DNA binding domain containing protein, expressed
LOC_Os11g45864OsAffx.25936.1.S1_s_at11/1111+27236910..27242611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45864OsAffx.25936.7.S1_s_at11/1111+27236910..27242611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45864OsAffx.25936.1.S1_at7/1111+27236910..27242611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45864OsAffx.25936.2.S1_x_at4/1111+27236910..27242611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45864OsAffx.25936.5.S1_x_at2/1111+27236910..27242611transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19397.1.S1_s_at--1135--5111Chr11:27218629..27218653 (25 bp)
GCAAGTTGGGTCTCCGGGCGGCGTC
LOC_Os11g45820
OsAffx.19397.1.S1_s_at--257--9451Chr11:27218739..27218763 (25 bp)
TCGGCGTGGACGAGGTTTTGGCGGC
LOC_Os11g45820
OsAffx.19397.1.S1_s_at--929--10391Chr11:27218754..27218778 (25 bp)
TTTTGGCGGCGGCATGCAGGCTGCT
LOC_Os11g45820
OsAffx.19397.1.S1_s_at--893--1391Chr11:27218836..27218860 (25 bp)
AGACGAGGTGGCTAGATCCACCTCC
LOC_Os11g45820
OsAffx.19397.1.S1_s_at--1053--1391Chr11:27218868..27218892 (25 bp)
AGACTCAGCGTCACAGCGGCGCTTG
LOC_Os11g45820
OsAffx.19397.1.S1_s_at--955--9691Chr11:27218878..27218902 (25 bp)
TCACAGCGGCGCTTGTTGCAGCGGT
LOC_Os11g45820
OsAffx.19397.1.S1_s_at--391--6171Chr11:27218930..27218954 (25 bp)
GAGGAAAGGGCGACTCCCGTGTGGC
LOC_Os11g45820
OsAffx.19397.1.S1_s_at--584--7451Chr11:27218965..27218989 (25 bp)
GTGTCTGTGGCGTCTGGCGGTGGCT
LOC_Os11g45820
OsAffx.19397.1.S1_s_at--242--9131Chr11:27219016..27219040 (25 bp)
TGCTGTGGCCGCGATGACAACGACA
LOC_Os11g45820
OsAffx.19397.1.S1_s_at--239--8471Chr11:27219021..27219045 (25 bp)
TGGCCGCGATGACAACGACAGCAGC
LOC_Os11g45820
OsAffx.19397.1.S1_s_at--216--8611Chr11:27219080..27219104 (25 bp)
TGGTGCGTTTCGGTAGCAGCGGCTG
LOC_Os11g45820
Target Sequence 
GCAAGTTGGGTCTCCGGGCGGCGTCGTCGGTGTGGCTGGCGGCGGGGCCGAGCACGAGACGCCCGGTGGGCGGCGTCGTC
GGCGTGGTTGGCGGCGGGCCGGAGGAGGCGTCGGCGTGGACGAGGTTTTGGCGGCGGCATGCAGGCTGCTGGCGACCCCA
GCCGGCGGAGGCAGAGGTAGAGGACGCCGGTGCCGTGGGGGTTTGGGAGACGAGGTGGCTAGATCCACCTCCCCTGCCCA
GACTCAGCGTCACAGCGGCGCTTGTTGCAGCGGTGGTGAGGCGGCAGGGTGCGGCTACGTGGAGGAAAGGGCGACTCCCG
TGTGGCGACGGCGGCGGTGTCTGTGGCGTCTGGCGGTGGCTGTGGCTGTGGCGGCGGCCGCCGCGGCTGCTGTGGCCGCG
ATGACAACGACAGCAGCGGCTGCTGTGGCACGGTGGAAGGAGGCACGGTGGTGGTGCGTTTCGGTAGCAGCGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19397.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis