Browse Element(s) Details


OsAffx.31501.1.S1_at

Description tigr:9639.m04272
TID=OsAffx.31501.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY DNA -binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4585011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45800NANA11+27208594..27208860hypothetical protein
LOC_Os11g45810NANA11+27210837..27211571hypothetical protein
LOC_Os11g45820OsAffx.19397.1.S1_s_at11/1111+27217028..27219220expressed protein
LOC_Os11g45840NANA11+27227764..27230508NBS-LRR disease resistance protein, putative
LOC_Os11g45850OsAffx.31501.1.S1_at11/1111+27233334..27234376WRKY DNA binding domain containing protein, expressed
LOC_Os11g45864OsAffx.25936.1.S1_s_at11/1111+27236910..27242611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45864OsAffx.25936.7.S1_s_at11/1111+27236910..27242611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45864OsAffx.25936.1.S1_at7/1111+27236910..27242611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45864OsAffx.25936.2.S1_x_at4/1111+27236910..27242611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45864OsAffx.25936.5.S1_x_at2/1111+27236910..27242611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45880Os.10827.1.S1_x_at1/1111+27245765..27248923transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g45890Os.53981.1.S1_at11/1111+27253080..27254824expressed protein
LOC_Os11g45899NANA11+27258123..27260710hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005730cellular_componentnucleolus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31501.1.S1_at--1112--10411Chr11:27233677..27233701 (25 bp)
TTATTTCCGATGTGCCCACAAGATG
LOC_Os11g45850
OsAffx.31501.1.S1_at--253--1811Chr11:27233748..27233772 (25 bp)
ACCCGCTGATGGTCGACGTCGTATA
LOC_Os11g45850
OsAffx.31501.1.S1_at--204--4611Chr11:27233828..27233852 (25 bp)
GCGAGCTCTAAGTCTAACCTGCGGC
LOC_Os11g45850
OsAffx.31501.1.S1_at--755--9451Chr11:27233946..27234069 (25 bp)
TCGGCGCTAATTACCCAAGATGCTA
LOC_Os11g45850
OsAffx.31501.1.S1_at--195--2811Chr11:27234062..27234085 (24 bp)
AAGATGCTACTACCGGTGTATACAC
LOC_Os11g45850
OsAffx.31501.1.S1_at--462--6891Chr11:27234078..27234102 (25 bp)
GTATACACAAGACCACGACGGGCTG
LOC_Os11g45850
OsAffx.31501.1.S1_at--870--4091Chr11:27234093..27234117 (25 bp)
CGACGGGCTGCACTGCGACAAAAAA
LOC_Os11g45850
OsAffx.31501.1.S1_at--1162--2271Chr11:27234115..27234139 (25 bp)
AAATGCACAGGCCACCGATGGTGAC
LOC_Os11g45850
OsAffx.31501.1.S1_at--139--7651Chr11:27234168..27234192 (25 bp)
GGGAGCACACCTGCGATCTGCAGAG
LOC_Os11g45850
OsAffx.31501.1.S1_at--201--5791Chr11:27234239..27234263 (25 bp)
GACGACGACATGTGTACCGACGATA
LOC_Os11g45850
OsAffx.31501.1.S1_at--863--7971Chr11:27234298..27234322 (25 bp)
GGATGCGTCCTCAATTAGTTTTCAA
LOC_Os11g45850
Target Sequence 
TTATTTCCGATGTGCCCACAAGATGACGACGGGCTGTAAGGCACGGAAGAAGGTGCAGCGCACCGACGGCGACCCGCTGA
TGGTCGACGTCGTATACAAGGGGGTTCACAGCTGTGCCGGCGTGCATTCCGACAGCCAGAGATCATCCGCCGCGAGCTCT
AAGTCTAACCTGCGGCCGACGAAGAGCATGCAGGTGAGGGCGAGCTCCAAGGACGTCGGCCCCCCAGACGACGGTTACAG
CTGGAAGAGGTACGGCCAGAAGAACATCTTCGGCGCTAATTACCCAAGATGCTACTACCGGTGTATACACAAGACCACGA
CGGGCTGCACTGCGACAAAAAATGCACAGGCCACCGATGGTGACCCACTCCTCTTCGACGTCGTGTACCACGGGGAGCAC
ACCTGCGATCTGCAGAGCACGCACTCCAACGACGTCGAACCGATCAGGCCGCAGTCTGGGCTCGACGACGACATGTGTAC
CGACGATACGACGACTGTCTCCACACGCCACGACAGCAACACGGATGCGTCCTCAATTAGTTTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis