Browse Element(s) Details


OsAffx.19402.1.S1_at

Description tigr:9639.m04302
TID=OsAffx.19402.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to stripe rust resistance protein Yr10
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4614011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g46090NANA11+27396108..27400052retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g46100OsAffx.19401.1.S1_at11/1111+27400653..27402236resistance protein, putative
LOC_Os11g46110NANA11+27403569..27403918hypothetical protein
LOC_Os11g46120Os.49932.1.S1_at10/1111+27404717..27407585expressed protein
LOC_Os11g46130OsAffx.7425.1.S1_at11/1111+27413256..27414209RGH1A, putative
LOC_Os11g46140OsAffx.19402.1.S1_at11/1111+27421923..27424237hypothetical protein
LOC_Os11g46150OsAffx.31506.1.S1_at10/1111+27438486..27440351hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19402.1.S1_at--569--6591Chr11:27423260..27423284 (25 bp)
GATTGACCATGACCAGAACCGCGTT
LOC_Os11g46140
OsAffx.19402.1.S1_at--751--1151Chr11:27423304..27423328 (25 bp)
AGTCTTTCAGCACTCTACTACTTAT
LOC_Os11g46140
OsAffx.19402.1.S1_at--653--9891Chr11:27423319..27423343 (25 bp)
TACTACTTATGCATCGAGGCCCCGG
LOC_Os11g46140
OsAffx.19402.1.S1_at--198--2811Chr11:27423364..27423388 (25 bp)
AAGATCCTTGGAGGGTTGCCGAGTC
LOC_Os11g46140
OsAffx.19402.1.S1_at--488--6451Chr11:27423435..27423507 (25 bp)
GATCACCGCTCATTTTCAACGAGGA
LOC_Os11g46140
OsAffx.19402.1.S1_at--568--1151Chr11:27423528..27423552 (25 bp)
AGTCGAGTTCAGTTTCAGCCTGCGC
LOC_Os11g46140
OsAffx.19402.1.S1_at--251--6611Chr11:27423584..27423608 (25 bp)
GATTGGAGAACCTGCTCTCACTTGA
LOC_Os11g46140
OsAffx.19402.1.S1_at--10--8671Chr11:27423645..27423669 (25 bp)
TGTGGAAGCCGCACTGAGGCACTTA
LOC_Os11g46140
OsAffx.19402.1.S1_at--116--5771Chr11:27423686..27423710 (25 bp)
GACGTCCCACAATTACACTGATAAG
LOC_Os11g46140
OsAffx.19402.1.S1_at--453--5431Chr11:27423721..27423901 (25 bp)
GAACCAACAGATACTGCGGCTTCCA
LOC_Os11g46140
OsAffx.19402.1.S1_at--885--10771Chr11:27424181..27424205 (25 bp)
TTGTTGTTGGACGACTTGCAAGCTC
LOC_Os11g46140
Target Sequence 
GATTGACCATGACCAGAACCGCGTTGCCGGCCGAGTGGATAGGGAGTCTTTCAGCACTCTACTACTTATGCATCGAGGCC
CCGGAGCTGCGTTTGGGGGACCTGAAGATCCTTGGAGGGTTGCCGAGTCTCCGTTCCCTGTGGATATCATCAAGATCAAA
TGAAAGGCCGCTCGTGATCACCGCTCATTTTCAACGAGGAGCCATGCCAAAGGTTCGGAGAGTCGAGTTCAGTTTCAGCC
TGCGCGATTTCAGCTCTAGGGCTGATTTTGGCTTCGGATTGGAGAACCTGCTCTCACTTGAGCATGTCACCATCCGTCTC
CACGACAAGGTGCATAGTGTGGAAGCCGCACTGAGGCACTTAACCAAGAAACACCCCAGACGTCCCACAATTACACTGAT
AAGGGACGGCGAAGAACCAACAGATACTGCGGCTTCCAACGACACAAGAACACAAGAAGAGTTGGCGGAAATGGAAGCTA
AGCAATTGGAAGAGAGGAGGGATAAATTCATTCAGGAACTTCATGAGGAGAATTTGTTGTTGGACGACTTGCAAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis