Browse Element(s) Details


OsAffx.7425.1.S1_at

Description tigr:9639.m04301
TID=OsAffx.7425.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NBS-LRR, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4613011/11RGH1A, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g46080Os.54361.1.S1_at11/1111+27387427..27394276NB-ARC domain containing protein, expressed
LOC_Os11g46080OsAffx.5663.1.S1_at1/1111+27387427..27394276NB-ARC domain containing protein, expressed
LOC_Os11g46090NANA11+27396108..27400052retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g46100OsAffx.19401.1.S1_at11/1111+27400653..27402236resistance protein, putative
LOC_Os11g46110NANA11+27403569..27403918hypothetical protein
LOC_Os11g46120Os.49932.1.S1_at10/1111+27404717..27407585expressed protein
LOC_Os11g46130OsAffx.7425.1.S1_at11/1111+27413256..27414209RGH1A, putative
LOC_Os11g46140OsAffx.19402.1.S1_at11/1111+27421923..27424237hypothetical protein
LOC_Os11g46150OsAffx.31506.1.S1_at10/1111+27438486..27440351hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7425.1.S1_at--784--2751Chr11:27413638..27413662 (25 bp)
AAGACATCAGGTTACGCGCCAAGGA
LOC_Os11g46130
OsAffx.7425.1.S1_at--781--5651Chr11:27413697..27413721 (25 bp)
GACAGTCTACATAAGCCTCGAGTTT
LOC_Os11g46130
OsAffx.7425.1.S1_at--168--1691Chr11:27413710..27413734 (25 bp)
AGCCTCGAGTTTCTGCTATCTACGA
LOC_Os11g46130
OsAffx.7425.1.S1_at--720--9371Chr11:27413764..27413788 (25 bp)
TCGACCAGCACAGCCTAGTTGGGAT
LOC_Os11g46130
OsAffx.7425.1.S1_at--1157--1611Chr11:27413845..27413869 (25 bp)
AGCGGCGATTGAAGACAGTGTCCAT
LOC_Os11g46130
OsAffx.7425.1.S1_at--495--9871Chr11:27413916..27413940 (25 bp)
TACAGCATGCTTAAGGATCGGGACC
LOC_Os11g46130
OsAffx.7425.1.S1_at--918--8771Chr11:27413960..27413984 (25 bp)
TGTTTCGGTGAGTCAGTGTCCTAAT
LOC_Os11g46130
OsAffx.7425.1.S1_at--780--7611Chr11:27414004..27414028 (25 bp)
GGGAAATGCTCTACCAACTGGATGG
LOC_Os11g46130
OsAffx.7425.1.S1_at--653--751Chr11:27414067..27414091 (25 bp)
ATGTAGACCAACTCATCCATGCAAG
LOC_Os11g46130
OsAffx.7425.1.S1_at--1021--7011Chr11:27414116..27414140 (25 bp)
GTACATATATACCACATCCACCATT
LOC_Os11g46130
OsAffx.7425.1.S1_at--182--91Chr11:27414141..27414165 (25 bp)
ATTGCCACACGCTTCATGAGTATTC
LOC_Os11g46130
Target Sequence 
AAGACATCAGGTTACGCGCCAAGGAGGTAAATGAATGGCGTGATCGGTACATGATAGATGACAGTCTACATAAGCCTCGA
GTTTCTGCTATCTACGACCCTCCTCGCCTGCCTGCAGATCTGTCCGTCGACCAGCACAGCCTAGTTGGGATTGACCAGGC
AGCGGCCGAGCTAATAGAGATGTTGGCATTGGAGGGTGGTGCGTTCGAGCGGCGATTGAAGACAGTGTCCATAGTTGGAA
TGGGAGGACTAGGCAAGACAACTCTTGCCAAACTAGTCTACAGCATGCTTAAGGATCGGGACCAGTTTCAATGTGGAGCT
TTTGTTTCGGTGAGTCAGTGTCCTAATAACAGGAAGAAAGTTTTCTGGGAAATGCTCTACCAACTGGATGGAAAAAATTA
TAACAACGTCCAGTACAATGCAGATAACAATGTAGACCAACTCATCCATGCAAGCCGAGACTCCCTTCAGAACAAGAGGT
ACATATATACCACATCCACCATTATTGCCACACGCTTCATGAGTATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis