Browse Element(s) Details


OsAffx.19456.1.S1_at

Description tigr:9640.m00123
TID=OsAffx.19456.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0221011/11Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g0225011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02180OsAffx.19454.1.S1_at4/1112+673082..675628hypothetical protein
LOC_Os12g02200Os.1310.1.S1_a_at11/1112+678079..681269CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os12g02210OsAffx.19456.1.S1_at11/1112+689489..689935Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g02220OsAffx.30781.1.S1_s_at11/1112+690573..690998Zinc finger, C3HC4 type family protein
LOC_Os12g02230Os.50557.1.S1_at11/1112+691719..693613expressed protein
LOC_Os12g02240Os.31991.1.S1_s_at5/1112+695945..696244hypothetical protein
LOC_Os12g02240Os.36558.1.S1_x_at5/1112+695945..696244hypothetical protein
LOC_Os12g02250Os.28385.3.S1_x_at10/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02250Os.28385.3.S1_at10/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02250OsAffx.25784.1.S1_x_at1/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02250Os.28385.1.S1_x_at1/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02260Os.21252.1.S1_at7/1112+706649..712432nucleotidyltransferase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19456.1.S1_at--892--6372Chr12:689761..689785 (25 bp)
GATCCGAAGATCTGGCTGCCGGACC
LOC_Os12g02210
OsAffx.19456.1.S1_at--721--552Chr12:689760..689784 (25 bp)
ATCCGAAGATCTGGCTGCCGGACCA
LOC_Os12g02210
OsAffx.19456.1.S1_at--15--4672Chr12:689638..689662 (25 bp)
GCGTGCAGGCACGAGTTCCACAAGG
LOC_Os12g02210
OsAffx.19456.1.S1_at--1057--3992Chr12:689637..689661 (25 bp)
CGTGCAGGCACGAGTTCCACAAGGA
LOC_Os12g02210
OsAffx.19456.1.S1_at--1000--7312Chr12:689636..689660 (25 bp)
GTGCAGGCACGAGTTCCACAAGGAA
LOC_Os12g02210
OsAffx.19456.1.S1_at--224--9052Chr12:689635..689659 (25 bp)
TGCAGGCACGAGTTCCACAAGGAAT
LOC_Os12g02210
OsAffx.19456.1.S1_at--447--5012Chr12:689634..689658 (25 bp)
GCAGGCACGAGTTCCACAAGGAATG
LOC_Os12g02210
OsAffx.19456.1.S1_at--534--8252Chr12:689631..689655 (25 bp)
GGCACGAGTTCCACAAGGAATGCAT
LOC_Os12g02210
OsAffx.19456.1.S1_at--574--1872Chr12:689628..689652 (25 bp)
ACGAGTTCCACAAGGAATGCATCTA
LOC_Os12g02210
OsAffx.19456.1.S1_at--6--6072Chr12:689626..689650 (25 bp)
GAGTTCCACAAGGAATGCATCTACC
LOC_Os12g02210
OsAffx.19456.1.S1_at--538--1232Chr12:689625..689649 (25 bp)
AGTTCCACAAGGAATGCATCTACCG
LOC_Os12g02210
Target Sequence 
GATCCGAAGATCTGGCTGCCGGACCACNCGCACCATCGCCGGCNGCGGGATGANTCGTCGGAGNNNNNNTGCAGCATATG
CCTGGGGGANNTGGAGGAGGGGGAGAGGTGCTGCACGCTGGNGGCGTGCAGGCACGAGTTCCACAAGGAATGCATCTACC
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19456.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis