Browse Element(s) Details


OsAffx.19516.1.S1_at

Description tigr:9640.m00535
TID=OsAffx.19516.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0615011/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06140OsAffx.29544.1.S1_x_at4/1112+2883647..2885971hypothetical protein
LOC_Os12g06140Os.52812.1.S1_at1/1112+2883647..2885971hypothetical protein
LOC_Os12g06150OsAffx.19516.1.S1_at11/1112+2897747..2899071uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os12g06160NANA12+2910704..2911579uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os12g06170OsAffx.19518.1.S1_at10/1112+2919443..2921117hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19516.1.S1_at--309--1491Chr12:2898708..2898732 (25 bp)
AGCAATGGCGCCACCAGTGTCACCG
LOC_Os12g06150
OsAffx.19516.1.S1_at--579--4171Chr12:2898737..2898761 (25 bp)
CGCCACTGCGGCTGAGCAATGCGGC
LOC_Os12g06150
OsAffx.19516.1.S1_at--1055--691Chr12:2898781..2898805 (25 bp)
ATGAGGAAGCTGGTTGCTCGTCTTC
LOC_Os12g06150
OsAffx.19516.1.S1_at--500--4531Chr12:2898819..2898843 (25 bp)
GCCGCCTCTGACCATGACCATGAAG
LOC_Os12g06150
OsAffx.19516.1.S1_at--46--5851Chr12:2898834..2898858 (25 bp)
GACCATGAAGAGGTCTCGGCCATAA
LOC_Os12g06150
OsAffx.19516.1.S1_at--914--7791Chr12:2898845..2898869 (25 bp)
GGTCTCGGCCATAAGCTAGGCAGGT
LOC_Os12g06150
OsAffx.19516.1.S1_at--226--10091Chr12:2898861..2898885 (25 bp)
TAGGCAGGTGATCGATTAGCTTAGA
LOC_Os12g06150
OsAffx.19516.1.S1_at--1025--3111Chr12:2898924..2898948 (25 bp)
AATTTTTCACCAAAAGTCGAATCAT
LOC_Os12g06150
OsAffx.19516.1.S1_at--688--2251Chr12:2898978..2899002 (25 bp)
AAATATATCTTTTTCTGCTGTTTAG
LOC_Os12g06150
OsAffx.19516.1.S1_at--116--3511Chr12:2899002..2899026 (25 bp)
GATAATTAGGTTTGTACCGAACTTG
LOC_Os12g06150
OsAffx.19516.1.S1_at--280--6991Chr12:2899015..2899039 (25 bp)
GTACCGAACTTGATTTTGCATGATG
LOC_Os12g06150
Target Sequence 
AGCAATGGCGCCACCAGTGTCACCGCCGCCGCCACTGCGGCTGAGCAATGCGGCGGCGGCGGCGGCGGTGGGGATGAGGA
AGCTGGTTGCTCGTCTTCTTCCTCCTGCTGCGCCGCCTCTGACCATGACCATGAAGAGGTCTCGGCCATAAGCTAGGCAG
GTGATCGATTAGCTTAGATATTGGAAGGAAGAAAATATTTTCTATTTTTCGACCCTAATTTTTCACCAAAAGTCGAATCA
TTTTAGCTTTTGTGAAAAATTAGGGGCGAAAAATATATCTTTTTCTGCTGTTTAGATAATTAGGTTTGTACCGAACTTGA
TTTTGCATGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis