Browse Element(s) Details


Os.52812.1.S1_at

Description gb:AK069410.1
DB_XREF= gi:32979434
TID=Os.52812.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023015O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023015O11, full insert sequence.
FL= gb:AK069410.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1856011/11hypothetical protein
LOC_Os12g061401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18520OsAffx.6325.2.S1_at10/119+11347301..11348992oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os09g18530OsAffx.17773.1.S1_at11/119+11359267..11362179Protein kinase domain containing protein, expressed
LOC_Os09g18540OsAffx.29918.1.S1_at11/119+11362791..11366120leucine-rich repeat protein kinase, putative
LOC_Os09g18550OsAffx.6326.1.S1_at11/119+11369318..11371006Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g18560Os.52812.1.S1_at11/119+11373270..11374130hypothetical protein
LOC_Os09g18569NANA9+11380762..11381015NA
LOC_Os09g18580NANA9+11382326..11382809hypothetical protein
LOC_Os09g18594Os.27681.1.S1_a_at11/119+11386161..11395235Protein kinase domain containing protein, expressed
LOC_Os09g18594Os.27681.2.S1_at11/119+11386161..11395235Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52812.1.S1_at--988--1311Chr09:11373981..11374005 (25 bp)
AGAGGAGGTCGGCACCTCCTATGAA
LOC_Os09g18560
Os.52812.1.S1_at--618--7791Chr09:11373975..11373999 (25 bp)
GGTCGGCACCTCCTATGAAAAGTTT
LOC_Os09g18560
Os.52812.1.S1_at--640--8231Chr09:11373971..11373995 (25 bp)
GGCACCTCCTATGAAAAGTTTGTAA
LOC_Os09g18560
Os.52812.1.S1_at--230--251Chr09:11373946..11373970 (25 bp)
ATATAATCAATTTACCACAACTATG
LOC_Os09g18560
Os.52812.1.S1_at--7--9731Chr09:11373940..11373964 (25 bp)
TCAATTTACCACAACTATGAAAAGT
LOC_Os09g18560
Os.52812.1.S1_at--34--10271Chr09:11373916..11373940 (25 bp)
TTTGATCTTAACAAACCTTTTGTAT
LOC_Os09g18560
Os.52812.1.S1_at--1078--10791Chr09:11373897..11373921 (25 bp)
TTGTATTTACAATCAGTTGTACCAT
LOC_Os09g18560
Os.52812.1.S1_at--713--1232Chr12:2883998..2884036 (24 bp)
AGTTGTACCATAGCATATATTTATT
LOC_Os12g06140
Os.52812.1.S1_at--917--4951Chr09:11373871..11373895 (25 bp)
GCATATATTTATTGTTGTTTCCCAC
LOC_Os09g18560
Os.52812.1.S1_at--1124--10391Chr09:11373863..11373887 (25 bp)
TTATTGTTGTTTCCCACAAATGGTG
LOC_Os09g18560
Os.52812.1.S1_at--928--8751Chr09:11373859..11373883 (25 bp)
TGTTGTTTCCCACAAATGGTGGGTT
LOC_Os09g18560
Target Sequence 
AGAGGAGGTCGGCACCTCCTATGAAAAGTTTGTAAATATAATCAATTTACCACAACTATGAAAAGTTTGATCTTAACAAA
CCTTTTGTATTTACAATCAGTTGTACCATAGCATATATTTATTGTTGTTTCCCACAAATGGTGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis