Browse Element(s) Details


OsAffx.6326.1.S1_at

Description tigr:9637.m01599
TID=OsAffx.6326.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1855011/11Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g186201/11Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18520OsAffx.6325.2.S1_at10/119+11347301..11348992oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os09g18530OsAffx.17773.1.S1_at11/119+11359267..11362179Protein kinase domain containing protein, expressed
LOC_Os09g18540OsAffx.29918.1.S1_at11/119+11362791..11366120leucine-rich repeat protein kinase, putative
LOC_Os09g18550OsAffx.6326.1.S1_at11/119+11369318..11371006Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g18560Os.52812.1.S1_at11/119+11373270..11374130hypothetical protein
LOC_Os09g18569NANA9+11380762..11381015NA
LOC_Os09g18580NANA9+11382326..11382809hypothetical protein
LOC_Os09g18594Os.27681.1.S1_a_at11/119+11386161..11395235Protein kinase domain containing protein, expressed
LOC_Os09g18594Os.27681.2.S1_at11/119+11386161..11395235Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6326.1.S1_at--177--3072Chr09:11410856..11410875 (20 bp)
AATCTAGGGTTCGTGAGCATCGACT
NONE
OsAffx.6326.1.S1_at--583--2871Chr09:11370749..11370773 (25 bp)
AAGTGGGCCTTCCTACGTGGACGAT
LOC_Os09g18550
OsAffx.6326.1.S1_at--72--7531Chr09:11370733..11370757 (25 bp)
GTGGACGATCGCACGAACATTTCCT
LOC_Os09g18550
OsAffx.6326.1.S1_at--936--1851Chr09:11370699..11370723 (25 bp)
ACGACGCGTACATAGCAACCGGAGA
LOC_Os09g18550
OsAffx.6326.1.S1_at--57--5871Chr09:11370642..11370666 (25 bp)
GAGCGCTATACACGTCAGGCCTTAG
LOC_Os09g18550
OsAffx.6326.1.S1_at--65--7512Chr09:11411092..11411114 (23 bp)
GTGGTTCATGCACGGCGACTACGAC
LOC_Os09g18620
OsAffx.6326.1.S1_at--558--5691Chr09:11370454..11370478 (25 bp)
GACTTCTGGTACGAGGTGACCGTCT
LOC_Os09g18550
OsAffx.6326.1.S1_at--196--9191Chr09:11370364..11370388 (25 bp)
TGCCTGCTGGACACCGGACATGGGA
LOC_Os09g18550
OsAffx.6326.1.S1_at--281--8111Chr09:11370349..11370373 (25 bp)
GGACATGGGACTCCGTTCATCTCGT
LOC_Os09g18550
OsAffx.6326.1.S1_at--1074--6211Chr09:11370314..11370338 (25 bp)
GAGGCCGATCGGCATCGACATGTAC
LOC_Os09g18550
OsAffx.6326.1.S1_at--265--8451Chr09:11370279..11370303 (25 bp)
TGGCGAACCGATCTCTTGGGCTGTT
LOC_Os09g18550
Target Sequence 
AATCTAGGGTTCGTGAGCATCGACTGCGGGCTAAGTGGGCCTTCCTACGTGGACGATCGCACGAACATTTCCTACATCTC
CGACGACGCGTACATAGCAACCGGAGAGAAGCACGAGATTTCATCGGAATACAAAAGCCGAGCGCTATACACGTCAGGCC
TTAGCCTGAGGAGCTTCCCTTCCGGCGGCCGCAACTGCTACGCCGTCGCCGCCGCCGCAAAAGGCCGCAAGTACCTCGTC
AGGGCGTGGTTCATGCACGGCGACTACGACGGCGGCGGGAAGAGCCTCGCGGTGAGGCCGGTGAGGTTCAACCTGAACAT
CGGCCTCGACTTCTGGTACGAGGTGACCGTCTCCGACGCCGCGTCGACGTACGCGTTAGAGGCGATCGCCGTCGCCGTGG
CCAGCTCGCTGTCGGTGTGCCTGCTGGACACCGGACATGGGACTCCGTTCATCTCGTCGCTGGAGCTGAGGCCGATCGGC
ATCGACATGTACCCCGGCGCTGTGGCGAACCGATCTCTTGGGCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis