Browse Element(s) Details


Os.27681.1.S1_a_at

Description gb:AK099784.1
DB_XREF= gi:32984993
TID=Os.27681.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27681 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096C22, full insert sequence.
FL= gb:AK099784.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1859411/11Protein kinase domain containing protein, expressed
LOC_Os09g191361/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18530OsAffx.17773.1.S1_at11/119+11359267..11362179Protein kinase domain containing protein, expressed
LOC_Os09g18540OsAffx.29918.1.S1_at11/119+11362791..11366120leucine-rich repeat protein kinase, putative
LOC_Os09g18550OsAffx.6326.1.S1_at11/119+11369318..11371006Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g18560Os.52812.1.S1_at11/119+11373270..11374130hypothetical protein
LOC_Os09g18569NANA9+11380762..11381015NA
LOC_Os09g18580NANA9+11382326..11382809hypothetical protein
LOC_Os09g18594Os.27681.1.S1_a_at11/119+11386161..11395235Protein kinase domain containing protein, expressed
LOC_Os09g18594Os.27681.2.S1_at11/119+11386161..11395235Protein kinase domain containing protein, expressed
LOC_Os09g18610OsAffx.20380.1.S1_at1/119+11402397..11405856retrotransposon protein, putative, unclassified
LOC_Os09g18610OsAffx.22711.3.S1_x_at1/119+11402397..11405856retrotransposon protein, putative, unclassified
LOC_Os09g18610OsAffx.20380.2.S1_x_at1/119+11402397..11405856retrotransposon protein, putative, unclassified
LOC_Os09g18610OsAffx.20380.1.S1_x_at1/119+11402397..11405856retrotransposon protein, putative, unclassified
LOC_Os09g18610OsAffx.22711.1.S1_x_at1/119+11402397..11405856retrotransposon protein, putative, unclassified
LOC_Os09g18620OsAffx.6326.1.S1_at1/119+11410905..11411548Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative, expressed
LOC_Os09g19136Os.27681.1.S1_a_at1/119+11416019..11422569hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27681.1.S1_a_at--265--2971Chr09:11393415..11393439 (25 bp)
AATGGACATATTGTGCAGCGCATAA
LOC_Os09g18594
Os.27681.1.S1_a_at--295--10771Chr09:11393464..11393488 (25 bp)
TTGAGGCAATTGCTGATCCGCGACT
LOC_Os09g18594
Os.27681.1.S1_a_at--693--8851Chr09:11393477..11393501 (25 bp)
TGATCCGCGACTTCATGGTGAGTTT
LOC_Os09g18594
Os.27681.1.S1_a_at--824--8132Chr09:11393528..11393552 (25 bp)
GGACATAGCGCTGTTGTGCACAAAA
LOC_Os09g18594
Os.27681.1.S1_a_at--969--911Chr09:11393554..11393578 (25 bp)
AGGCATCTAGTGAAAGGCCAACGAT
LOC_Os09g18594
Os.27681.1.S1_a_at--1016--6931Chr09:11393589..11393613 (25 bp)
GTAGCACAGCTAAAGGATGCCCTAG
LOC_Os09g18594
Os.27681.1.S1_a_at--248--6331Chr09:11393604..11393628 (25 bp)
GATGCCCTAGCATTGGAAGAAGCCC
LOC_Os09g18594
Os.27681.1.S1_a_at--1039--5391Chr09:11393622..11393646 (25 bp)
GAAGCCCGTTTAAGCTACAGTACCA
LOC_Os09g18594
Os.27681.1.S1_a_at--1047--9831Chr09:11393637..11393661 (25 bp)
TACAGTACCAGTGACATTAGCCAAG
LOC_Os09g18594
Os.27681.1.S1_a_at--896--7731Chr09:11393661..11393685 (25 bp)
GGTGGTGCCAATGCCGAATTGTCAA
LOC_Os09g18594
Os.27681.1.S1_a_at--1080--3151Chr09:11393677..11393701 (25 bp)
AATTGTCAATCAACTCCATGCCAAC
LOC_Os09g18594
Target Sequence 
AATGGACATATTGTGCAGCGCATAAAAGAGAAGGTTAATATGGGAAATATTGAGGCAATTGCTGATCCGCGACTTCATGG
TGAGTTTGATATCAGCTCAATTTGGAAGGTTGTGGACATAGCGCTGTTGTGCACAAAAGAGGCATCTAGTGAAAGGCCAA
CGATGAGTATGGTGGTAGCACAGCTAAAGGATGCCCTAGCATTGGAAGAAGCCCGTTTAAGCTACAGTACCAGTGACATT
AGCCAAGGTGGTGCCAATGCCGAATTGTCAATCAACTCCATGCCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27681.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis