Browse Element(s) Details


OsAffx.6325.2.S1_at

Description tigr:9637.m01596
TID=OsAffx.6325.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, 2OG-Fe(II) oxygenase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1852010/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18480OsAffx.15708.1.S1_at1/119+11323823..11325091retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g18490Os.45976.1.S1_x_at3/119+11331584..11335336transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18500Os.46306.1.S1_x_at2/119+11337814..11340899transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18510NANA9+11342164..11343633hypothetical protein
LOC_Os09g18520OsAffx.6325.2.S1_at10/119+11347301..11348992oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os09g18530OsAffx.17773.1.S1_at11/119+11359267..11362179Protein kinase domain containing protein, expressed
LOC_Os09g18540OsAffx.29918.1.S1_at11/119+11362791..11366120leucine-rich repeat protein kinase, putative
LOC_Os09g18550OsAffx.6326.1.S1_at11/119+11369318..11371006Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g18560Os.52812.1.S1_at11/119+11373270..11374130hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6325.2.S1_at--227--671NONE
ATGAAAGATAACACGATCCGCCCCT
NONE
OsAffx.6325.2.S1_at--697--3431Chr09:11347714..11347738 (25 bp)
CAGAGGATGGCCCTGCAGCGCTACC
LOC_Os09g18520
OsAffx.6325.2.S1_at--68--4751Chr09:11347625..11347649 (25 bp)
GCTGTTGCTGCAAGTCAATGACACG
LOC_Os09g18520
OsAffx.6325.2.S1_at--377--4431Chr09:11347543..11347567 (25 bp)
GCCTTCGTCATTAACGTCGGCGAGA
LOC_Os09g18520
OsAffx.6325.2.S1_at--632--6691Chr09:11347430..11347454 (25 bp)
GTTCCAGGACGCGTGCATCGCTGGA
LOC_Os09g18520
OsAffx.6325.2.S1_at--816--9051Chr09:11347417..11347441 (25 bp)
TGCATCGCTGGAGTGGTGAAGCCAC
LOC_Os09g18520
OsAffx.6325.2.S1_at--389--4811Chr09:11347385..11347409 (25 bp)
GCTCGGCGAGCAAAGATATCATGCG
LOC_Os09g18520
OsAffx.6325.2.S1_at--1126--3271Chr09:11347375..11347399 (25 bp)
CAAAGATATCATGCGACCAATAGGT
LOC_Os09g18520
OsAffx.6325.2.S1_at--869--7791Chr09:11347353..11347377 (25 bp)
GGTCGGAGTATTACAAGGGCCAGTT
LOC_Os09g18520
OsAffx.6325.2.S1_at--406--2871Chr09:11347339..11347363 (25 bp)
AAGGGCCAGTTAAAAGCATTGCGTC
LOC_Os09g18520
OsAffx.6325.2.S1_at--133--1211Chr09:11347332..11347356 (25 bp)
AGTTAAAAGCATTGCGTCGCCAAGG
LOC_Os09g18520
Target Sequence 
ATGAAAGATAACACGATCCGCCCCTGGCGGCAGAGGATGGCCCTGCAGCGCTACCCTCCTTGCCGCCATCCGGAGAAGGT
GATGGGCATTGCGCCGCACTCCGACGGCTTCGGGCTGACGCTGTTGCTGCAAGTCAATGACACGCCGGGCCTGCAGGTTA
GCAAGGACGGCCGGTGGCGACCTGTGCGGCCGCTGCCGGGTGCCTTCGTCATTAACGTCGGCGAGATCCTCGAGGTTCTC
ACCAATGGCTACTACAAGAGCGTGTTCCACAGGGTGGTCGTTGACACCGACAAGGACCGGGTTACCGTCGTGGTGTTCCA
GGACGCGTGCATCGCTGGAGTGGTGAAGCCACTACCGGAGCTCGGCGAGCAAAGATATCATGCGACCAATAGGTCGGAGT
ATTACAAGGGCCAGTTAAAAGCATTGCGTCGCCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6325.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis